Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00170 ACCACGACTTTTGGCGCGATTTGTGTGGAACTAAACAAGCTATTCGCCGCTTGTCGGATTCAGGCACCGTTCACGGCTGACCGTCGAGCCGACAATCGCCGATCCGACCATCTGTTGCCGGAATCTGAATTCTTACTACTTCCGTTCTTTCTAAAGCCACCGTCGCCACAAGCTTCCTTGGCCGGAGAGTTCGTTTTGCATGCATCAGAGAGTAAAAGGCAAGCGTACGACCAGTGGCGGTATAGTGCATTCCAGTTGTGGGTTAGGCAGCTGGGAGGTGAAGGTTTGGTATTAATGGCTAGTCCTGTGGATAACCTACACCCTGAAATTCGTGGTATAAAGGGAGATGGTCAGCAAGCTGAGGATAAAAACCAGCATGTTGAGAAAGAGGGCGGCCTGAGTGGTGGTGAGAGGGACATGGCTCCGGTTACTGGCAATTCCATCCACAGGTCCGGTTCTCGTCCACTGCTAGACCTCAGTAAAGCTGCAATTCAGGGCAATTTCGAGGAGAGAGACCCTACAATTCTTCTGCCTAACCAATCTGATGATATATCTCACCTGGCTCTGGATATCGGCGGATCTCTCATCAAATTAGTTTACTTTTCAAGGCATGAAGATCAATCGGTTGATGATAAGAGGAAGAGGAGCATGAGGCAGAGGCTGGGGTTTTCAAATGGTAATAGAAGAAGTTATCCAGTTCTTGGTGGGAGGCTTCATTTTGTAAAGTTTGAGACATGCAAGATTAACGAGTGCTTAGACTTCATCCATTCCAAGCAGCTACATCGTGGTGCTAGCAACAATTTACCTCGTTGGCATTCAGATGGCCCAACAAATGAAAATGCCATTATTAAGGCAATACGTCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTCGTGCAACTTGACCATAATGAATTATTTCCCTATTTGCTTGTTAACATTGGATCTGGTGTCAGCATGATCAAGGTTGATGGCGACGGGAAATTTCAGAGAGTTAGTGGGACAAATGTTGGAGGGGGTACCTACTGGGGTTTAGGAAGGCTGTTAACAAAATGTAATAGCTTTGATGAGTTGTTAGAGCTTACTCAAAAGGGAGATAATAGCACAATTGACATGCTTGTTGGGGATATATATGGTGGCATGGATTACTCGAAGATTGGTCTTTCTGCGTCAACAATTGCATCAAGTTTTGGCAAGACCATCTCAGAGAGCAAGGAGCTTGAGGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCATATAATATTGGGCAGATATCGTACTTGAATGCTCTACGGTTTGGACTTAAGAGAATCTTTTTCGGAGGATTCTTTATCAGGGGACATGCATATACCATGGATACAATTTCCTTTGCGGTTCACTTTTGGTCAAAAGGAGAAGCACAAGCAATGTTTTTGCGTCATGAAGGGTTCTTGGGTGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTCGATTATCTATTGGCCCATCAGTTAGTTGAAAGGTTTCCTATGGGTGCACCATATACAGGAGGGAGGGTTCATGGGCCTCCACTTGGTGATTTGAATGAAAAGATCTCTTGGATGGAGAAATTTGTGCAGAAGGGAACTGAAATAACTGCGCCTGTTCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGGGACCCTGCGATCTGATGCAAGTGCCCTAAACGTTGGTGTTCTCCATCTAATACCCAATTTGGAGGTGTTCCCTCTGTTGGCTGATCCAAAAATATATGAACCTAACACTATTGATCTCTCTGATCACCGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGATCATTTACCAGATCTTGCTGTTGCAAGCGAAGGTGGAACTGATGATGCCAAGAGAAGAGGTGATGCATTTGCTCGGGCATTTTCGGCCCACTTGAGGAGGTTGATGGAGGAACCTACAGCATATGGAAAATTGGGTTTGGCTAATCTACTGGAACTGAGGGAAGAGTGCTTGAGGGAGTTCCAATTTTTTGATGCCTATAGAAGCATAAAACAGAGGGAGAATGAGGCATCACTTGGTGTTTTACCTGACCTGCTGTTGGAACTTGATAGTATGAATGAGGAAGCAAGACTTCTGACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGTTCTCGTGCCTGTGTCGATCTCTATCACAAGGGGACAATAATTGAGATTTACAAAATGAGTCGCAATAAGATGCAGAGGCCGTGGCGGGTCGATGATTTTGATGCCTTCAGAGAAAGAATGTTAGGATCTGGGGATAAGAAACCCATTCCTCATAAAAGAGCTCTTCTCTTTGTGGACAACTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCCTGGCAAGGGAACTCCTCCGACGTGGAACTGAAGTTGTTTTAATTGGAAACTCCCTTCCTGCCATAAATGATGTAACCGCAATGGAGCTTCCTGATATAGTAGTTGAGGCTGCCAAGCACTGTGACATACTACGTAGAGCTGCTGAAGCGGGCGGATTGATTGTGGATGCCATGGTTAACACTGCGGATGGTTCTAAAGAGCGTTCATCATCTGTTCCCCTGATGGTTGTAGAAAATGGCTGTGGTAGTCCATGTATAGATCTAAGGCAGGTCAGCTCTGAGCTGGCTGCTGCTGCAAAAGATGCTGATTTGGTTATCTTGGAAGGAATGGGGAGAGCCCTTCATACCAACTTAAACGCCCAATTTAAATGTGATGCTTTAAAGGTGATGTTCACTGGTTCTCTACTTGCCATGGTGAAAAATCAGAGGCTGGCAGAGAAATTGTTCAATGGAAAGATATATGACTGTGTGTGCAAATACGAGCCATCACACTGA 2925 45.23 TTTFGAICVELNKLFAACRIQAPFTADRRADNRRSDHLLPESEFLLLPFFLKPPSPQASLAGEFVLHASESKRQAYDQWRYSAFQLWVRQLGGEGLVLMASPVDNLHPEIRGIKGDGQQAEDKNQHVEKEGGLSGGERDMAPVTGNSIHRSGSRPLLDLSKAAIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSMRQRLGFSNGNRRSYPVLGGRLHFVKFETCKINECLDFIHSKQLHRGASNNLPRWHSDGPTNENAIIKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELTQKGDNSTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISESKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDYLLAHQLVERFPMGAPYTGGRVHGPPLGDLNEKISWMEKFVQKGTEITAPVPMAPPGTTGLGGFEVPLSKGGTLRSDASALNVGVLHLIPNLEVFPLLADPKIYEPNTIDLSDHRELEYWFTVLSDHLPDLAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLGVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYKMSRNKMQRPWRVDDFDAFRERMLGSGDKKPIPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLIGNSLPAINDVTAMELPDIVVEAAKHCDILRRAAEAGGLIVDAMVNTADGSKERSSSVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNLNAQFKCDALKVMFTGSLLAMVKNQRLAEKLFNGKIYDCVCKYEPSH 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 856894 868487 - CmaCh18G001700.1 Cma18g00170 313508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00170 974 PANTHER PANTOTHENATE KINASE 280 889 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cma18g00170 974 Gene3D - 289 474 - -
Cma18g00170 974 Pfam Fumble 281 492 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cma18g00170 974 Pfam Fumble 186 265 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cma18g00170 974 TIGRFAM panK_eukar: pantothenate kinase 282 493 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cma18g00170 974 PANTHER PANTOTHENATE KINASE 2 134 263 - -
Cma18g00170 974 Gene3D - 178 273 - -
Cma18g00170 974 Pfam Damage-control phosphatase ARMT1-like domain 675 955 IPR002791 -
Cma18g00170 974 SUPERFAMILY Actin-like ATPase domain 184 262 IPR043129 -
Cma18g00170 974 PANTHER PANTOTHENATE KINASE 134 263 IPR004567 GO:0004594|GO:0005524|GO:0015937
Cma18g00170 974 PIRSF PanK_long 140 269 IPR015844 GO:0004594|GO:0015937
Cma18g00170 974 PIRSF PanK_long 277 974 IPR015844 GO:0004594|GO:0015937
Cma18g00170 974 Gene3D - 607 688 IPR035073 -
Cma18g00170 974 MobiDBLite consensus disorder prediction 114 135 - -
Cma18g00170 974 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 768 972 - -
Cma18g00170 974 PANTHER PANTOTHENATE KINASE 2 280 889 - -
Cma18g00170 974 SUPERFAMILY Actin-like ATPase domain 290 494 IPR043129 -
Cma18g00170 974 MobiDBLite consensus disorder prediction 114 153 - -
Cma18g00170 974 SUPERFAMILY AF1104-like 588 972 IPR036075 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00170 K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein - csv:101203117 1561.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00170 Cma-Chr18:856894 Cma19g00809 Cma-Chr19:7791495 1.57E-59 dispersed
Cma18g00170 Cma-Chr18:856894 Cma18g00796 Cma-Chr18:7010953 9.81E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00170 Cma_Chr18 FPKM 15.690693 18.763727 16.275774 17.00769 18.975401 17.901331 18.843706 17.32305 17.662344 17.61941