Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00172 ATGCAGAGCTCTGCGGTTACTTTATCGCCTGCTCTTCCTCTTCTCAAGCCACGGAGGCCTTTGAGTTCGTCTTTCAGCTCTGGATGTAACTCAGTTCGGGTATCTTCTTCGTCTTCCTCGAATTCCAGAGATCTCGGGGACCTGAACAATGTTCGTCTCACTTCCTCATGGCCGCAGCGATCTTGGACTCTGTCTTCGTCTCCTTTTTCCTCTGCGCAACTCCGGCCATGGACTGGCGTGCCCTCGCTTGCTTCGGATTCTGATGCGAGTCATTTCAAGGTTCAGGCCACTGCGGTGCCGGATAGCGCAGGAGAGGATGCTAGTGCTGGCGGTAATCTAAGGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTTCTCAAGGTGTTCCCGTTCCCTGTAACTGTCACTGCAGTTCAATTTGCTGTAGGTACTGTACTTGTTGTTCTTATGTGGGGACTTAACCTTTACAAAAGGCCAAAGATCAGTGGTGCTCAGCTTGCTGCTATTCTGCCGCTGGCATTCGTTCACACATTGGGGAACCTTTTTACAAATATGAGTCTTGGGAAAGTAGCAGTATCGTTCACTCACACAATCAAAGCTATGGAGCCATTTTTTTCAGTTATCCTGTCGGCAATGTTTCTTGGAGAGACTCCCACTCCCTGGGTAGTTGCATCTCTTCTGCCAATTGTCGGTGGTGTTGCATTGGCATCTGCCACTGAGGCGTCCTTCAACTGGGCTGGATTTTGGAGTGCAATGGCGTCCAATGTGACTAATCAATCTCGTAACGTCCTTAGCAAAAAGGTCATGGTGAAGAAAGATGATTCAATTGACAACATCACGCTCTTTTCAATTATAACGGTCATGTCCTTTTTCTTACTATCCCCTGTGGCTATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACCTTCAATCAGCGGGTTTGAACATGAATCAAGTCTACACTAGGTCGCTTCTTGCTGCCCTTTGTTTCCATGCATACCAACAGGTTTCTTACATGATTTTGCAAAGAGTTTCGCCTGTTACCCACTCGGTCGGAAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTCCAAACACCAGTTTCTCCAATCAACTCTCTTGGCACTGGAGTAGCTCTTGCTGGGGTTTTCCTGTATTCAAGAGTTAAGCGCATCAAAGCTAAGCCAAAGACAGCTTAA 1260 47.14 MQSSAVTLSPALPLLKPRRPLSSSFSSGCNSVRVSSSSSSNSRDLGDLNNVRLTSSWPQRSWTLSSSPFSSAQLRPWTGVPSLASDSDASHFKVQATAVPDSAGEDASAGGNLRKTLELGLLFGLWYLFNIYFNIYNKQVLKVFPFPVTVTAVQFAVGTVLVVLMWGLNLYKRPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGETPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKKDDSIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNMNQVYTRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGVALAGVFLYSRVKRIKAKPKTA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 873560 877248 - CmaCh18G001720.1 Cma18g00172 313510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00172 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 331 410 - -
Cma18g00172 419 PANTHER SOLUTE CARRIER FAMILY 35 87 394 - -
Cma18g00172 419 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 117 417 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cma18g00172 419 SUPERFAMILY Multidrug resistance efflux transporter EmrE 163 252 - -
Cma18g00172 419 MobiDBLite consensus disorder prediction 20 44 - -
Cma18g00172 419 Pfam Triose-phosphate Transporter family 118 407 IPR004853 -
Cma18g00172 419 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 87 394 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00885 Cma18g00172 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00172 Cma-Chr18:873560 Cma18g01109 Cma-Chr18:9049595 7.46E-59 dispersed
Cma13g00885 Cma-Chr13:7158062 Cma18g00172 Cma-Chr18:873560 0 wgd
Cma18g00172 Cma-Chr18:873560 Cma04g02695 Cma-Chr4:18244050 9.32E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00172 K15283 - csv:101203848 683.715