Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00178 ATGGGTCAGCTCAAAGTTCCACTATTGTTCTGTATTTGTTGGGTTTTTTCTCTTTTGTGCTTTGGAGCTCGCTGCCATGGTTCTGAGGTCACTGTGAAGTTCTTGGAGGCTCCTAATGCTTTCTCTCGCATAAAGTCAGCCACATTTGTGTTCGAAATTTTAGTGAACGGCCACAGTTATAAGTGCAAGGACTGCGACATCAGTTGTTCGCTTGATAACAGCCACCCTTTAGGCTGTAATGAAGGAAACATTTTCTACTCTGAATTGGAGGATGGAGTGCACAAATTCAAGGTCTGCACTAATTTTTCCAAGGGAGTTAGCTGTTCTAGCTACAACTGGACTGTTGATACAGTTCCCCCCACAGCCTCTATTATGGCCTCAACGATGTTCACGAACGCGTTAAATGTTTCCGTAAATATTTCTTTCTCCGAACCTTGTAGTAGGGGTGGAGGTTTCGGATGTTCATCCGTAGAAGCCTGCAACCTACTTGTGTACGGTGAAGGGCATGTTATACCATCATCTTTCAAAGTTCTTCAGCCCAACCTCAAATACTCACTCTCTGTGTCCTTGCTATCTACCACTCAATATGGAAGAATTATATTAGCAATGGATAAGAACTTCTGTACTGATAGAGCAGGAAATCTATTCACAAGAACAGAAAATTCAATATCATATGTGCACTTTGACAGAAGAAAACTACTCGCCAACCTGAAAACTGGTGTTCCCGAAAGACTACTCGAGCTCAACAACGACACCAGACTGGTACAAGCAACAAACAAACATGACAACTTAAAGGTGTATTTATACTTTTCAGAATCAGTTCTTAATTCATCTATGGAAGTTTTGAATTCACTTGAAGTAAGCGAAGGAACGCTTCGTCCAATGAATGGAAGGAGCCTTGGAAATCGAAGATTCAGCTTCATGGTTTCAAATGTTTCTGAAATTGCTATAATCTCTGTGAGCCTCAAGCCCAGCTCTGTAGTGAGCAGACAAGGAAATCCTGTTGCACCACTGCCACCAGTTACTTTTCTTTATGATTCTATTAGACCAACTGTAATGCTCAATACAACTACTCCTATGAGGACTAAAGAGAAAATATTTTTGGTCACTGTGAACTTCATGAAGCCTGTATTTGATTTCAACTCGTCCTGTGTATCGATTCGTGGTGGTCGTTTGCAGAGGCAAACGGGCAGGAGTGTCTACTCCGTTGAAGTACGAGCCGAGGATGAAGTTGTATTTGTCAGCGTCCCCGAAAACGTAACGGCCGATGTTGCTGGAAATCATAATGTAGCATCAAATAGTCTACAAGTGTGGCACTATTCTCTCCCGACGATATCTCGGGTCGTTTCGATCTTTGTAATCGCTTCGTTTGCAGCAACATCCCTCACAGCAGGACTACTCACTCTATCAACAGCTAGCCTTCAATCCGAAGGAGTACTCGTGAGATCATCGTCCTACCTGACATACAATCCTACAAGAAATATTTTTAGAATTGCTTGTCACGTTCAAATTTTCGCGCTATCTATATGGCTGCCAGTTACATTGCCTGTTGAGTACTATGAATTTGCTAATGGTTTGCAATGGAGTATTCCTTATCTTAAAGTTCCGTGGGAAGATGAACACAATCGACCTGACTTAAGTGGCTATAGCCCGGTTACTGGATCGAATCCTTATCTAGCCAAAACTTCTGATTCAAAAGTCCTTCAAAACAAGGTTCCAGGCAAAAACTTTACTATGGCTGATCAGTTATATGGATTGCCCCTTACTCCAATGGAATACAGATCGTTTTTCGAGAGCCAAAATATCATACCCCAAGCTGATGATGTTTTTGGAGCAGGAAGTTACAGTCAGTGGCAAGATTTTTATAGATGCATGTTCTGGTTGGGAATTTTTGCTGGAAGTTTGATATTCCTCCATGTACTTTTCCTTTTCATTATGAAATGTCGAAAGAAAATATACAACACACAGGGAAACTATGGAGCACTTACCTTCCCTAGATTTGAGCTATTCCTTACATTTGTTTCTCTACCTTCCATGTCGATGGCCTCGGGCGCACTATTTAGAGGACTAATAGTAGGAGTTTTGCTGCTCGGCGTTCTATCGCTTCTTTTACTCGCCTTACTGTTGTTCCTGTCGGTCGGAATCACGTTCGGGAAGCTACTTCAGTATAAAGAAGTTCATCAAGAAGGTCAGAAATTTCATTGGTATCAAGAACTTGTTCGTGTAACTCTTGGTCCTGGCAAGAGGAGTCAATGGACATGGAAAAACCAGCCAAGCTCTATTTACCTTATCATTTTTGGGCCAATGTTTGAAGATCTGAGGGGTCCTCCAAAGTACATGCTCTCTCAGATTTCCATGGCGAATCCCAACAAACGTGGCGATCGTATAATCGCCTCCGACGACGAAACAGAAGATGCAGAAGCACCATTCATCCAAAAGCTATTTGGTATCCTTCGAATATACTACACGCTCCTCGAGTCGATCAAACGAGTCACTCTTGGAGTCATGGCTGGTGCTTACAAGGAAACAATCTCTTCTAGAACTCCAATTATTACCTTATTATGCATCTCATCATTTCAGCTCTTTTTCCTTGTTCTTAAGAAGCCATTTATCAAGAAAAAAGTTCAGTTGGTTGAGATCCTTTCGATTGCTTGTGAAGTCGGGTTTTTCGCTATTTGTGCCGTTCTCTTAGACCAAGATTTTTCGATCATGGATCAAAAGAAACTTGGAATAACCATGCTGGTGCTGTTCCTTATAGGCTACTGTCCACAACTCATCAATGAATGGTATGCATTGTTCAAACAAGCTAAGCAGCTTGACTTTGTTGGGCACTCATTCTTCATAGGACTCAAAGTGGCTTGTATTGGATTCCTACTCCTATTCTTCCCACAGAGATTCACTAAGAACTTGGAGAGTATTTTCGCAGTGACGCTTAGCGGAGACTCCGAAACCGTCGATAATTCAACTGATAGGAACAAGTCTAGCAGTCGGAGCTCGAGTAACGAGAAACCATGGCTGAAACAGCTTCGGAAGCTGGCTAAGGCTAGCTTCACTAAAGAGCAAGGTGGGACATCAACTGATCCTTCAGGAAGTGGTACTCAATGGAGTGGCCTTTGGGGGCGGAGGAGTAGGAGCAGGAGTAGCAGAAGCTCCTCCATAAGTTCATCTGATTTCAGGTCTAAATCCAGAGCCATTGCAATTGATATAAGAAAATTCCAAGAGAATATATTAGTACGATTCAGCGAGGTCATGGGGTCGTGGTTCAGCTCAAACAAATTCAGTAAAGAAGAGCAGAATCAGTCGCTTAACGAGGCCAAGCAGATTATCTCCTCTAATCCCGTTGTTGTTTTCAGCAAAACTTACTGTGGATATTGCTCGAGAGTCAAGAAGTTGCTCACACAGCTTGGAGCTAGTCATAAGGTCATTGAATTGGACCAAAAAAGTGATGGAGATGCAATTCAATCAGCTTTAGCAGAGTGGACGGGTCAAACCACGGTGCCTAACGTGTTTATCGGAGGAAAACACATCGGTGGTTGCGATGCGGTCACAAATAAGCAGAGCAGTGGTCAGCTGGTGCCACTTCTTGCTGCTGCTGGTGCCATCGCCAATGACTCTGCTCAGCTGTGA 3627 42.85 MGQLKVPLLFCICWVFSLLCFGARCHGSEVTVKFLEAPNAFSRIKSATFVFEILVNGHSYKCKDCDISCSLDNSHPLGCNEGNIFYSELEDGVHKFKVCTNFSKGVSCSSYNWTVDTVPPTASIMASTMFTNALNVSVNISFSEPCSRGGGFGCSSVEACNLLVYGEGHVIPSSFKVLQPNLKYSLSVSLLSTTQYGRIILAMDKNFCTDRAGNLFTRTENSISYVHFDRRKLLANLKTGVPERLLELNNDTRLVQATNKHDNLKVYLYFSESVLNSSMEVLNSLEVSEGTLRPMNGRSLGNRRFSFMVSNVSEIAIISVSLKPSSVVSRQGNPVAPLPPVTFLYDSIRPTVMLNTTTPMRTKEKIFLVTVNFMKPVFDFNSSCVSIRGGRLQRQTGRSVYSVEVRAEDEVVFVSVPENVTADVAGNHNVASNSLQVWHYSLPTISRVVSIFVIASFAATSLTAGLLTLSTASLQSEGVLVRSSSYLTYNPTRNIFRIACHVQIFALSIWLPVTLPVEYYEFANGLQWSIPYLKVPWEDEHNRPDLSGYSPVTGSNPYLAKTSDSKVLQNKVPGKNFTMADQLYGLPLTPMEYRSFFESQNIIPQADDVFGAGSYSQWQDFYRCMFWLGIFAGSLIFLHVLFLFIMKCRKKIYNTQGNYGALTFPRFELFLTFVSLPSMSMASGALFRGLIVGVLLLGVLSLLLLALLLFLSVGITFGKLLQYKEVHQEGQKFHWYQELVRVTLGPGKRSQWTWKNQPSSIYLIIFGPMFEDLRGPPKYMLSQISMANPNKRGDRIIASDDETEDAEAPFIQKLFGILRIYYTLLESIKRVTLGVMAGAYKETISSRTPIITLLCISSFQLFFLVLKKPFIKKKVQLVEILSIACEVGFFAICAVLLDQDFSIMDQKKLGITMLVLFLIGYCPQLINEWYALFKQAKQLDFVGHSFFIGLKVACIGFLLLFFPQRFTKNLESIFAVTLSGDSETVDNSTDRNKSSSRSSSNEKPWLKQLRKLAKASFTKEQGGTSTDPSGSGTQWSGLWGRRSRSRSSRSSSISSSDFRSKSRAIAIDIRKFQENILVRFSEVMGSWFSSNKFSKEEQNQSLNEAKQIISSNPVVVFSKTYCGYCSRVKKLLTQLGASHKVIELDQKSDGDAIQSALAEWTGQTTVPNVFIGGKHIGGCDAVTNKQSSGQLVPLLAAAGAIANDSAQL 1208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 895429 907944 - CmaCh18G001780.1 Cma18g00178 313516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00178 1208 MobiDBLite consensus disorder prediction 1017 1055 - -
Cma18g00178 1208 MobiDBLite consensus disorder prediction 982 1003 - -
Cma18g00178 1208 SUPERFAMILY Thioredoxin-like 1103 1200 IPR036249 -
Cma18g00178 1208 Gene3D Glutaredoxin 1093 1208 - -
Cma18g00178 1208 PANTHER - 13 1069 - -
Cma18g00178 1208 PRINTS Glutaredoxin signature 1173 1186 IPR014025 -
Cma18g00178 1208 PRINTS Glutaredoxin signature 1159 1172 IPR014025 -
Cma18g00178 1208 PRINTS Glutaredoxin signature 1114 1132 IPR014025 -
Cma18g00178 1208 PANTHER TRANSMEMBRANE PROTEIN 13 1069 - -
Cma18g00178 1208 CDD GRX_GRXh_1_2_like 1113 1194 - -
Cma18g00178 1208 ProSiteProfiles Glutaredoxin domain profile. 1102 1202 - -
Cma18g00178 1208 Pfam Glutaredoxin 1114 1176 IPR002109 -
Cma18g00178 1208 TIGRFAM GRX_euk: glutaredoxin 1114 1194 IPR011899 -
Cma18g00178 1208 MobiDBLite consensus disorder prediction 1018 1055 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00178 - - - cmos:111456808 1951.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00091 Cma18g00178 CCT
Cma13g00879 Cma18g00178 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00359 Cma-Chr10:1659092 Cma18g00178 Cma-Chr18:895429 1.91E-22 dispersed
Cma10g00360 Cma-Chr10:1662758 Cma18g00178 Cma-Chr18:895429 1.95E-19 dispersed
Cma18g00178 Cma-Chr18:895429 Cma11g01527 Cma-Chr11:9970461 3.13E-16 dispersed
Cma07g00450 Cma-Chr7:1964554 Cma18g00178 Cma-Chr18:895429 2.97E-22 transposed
Cma17g01358 Cma-Chr17:9080175 Cma18g00178 Cma-Chr18:895429 7.20E-19 transposed
Cma13g00879 Cma-Chr13:7133144 Cma18g00178 Cma-Chr18:895429 0 wgd
Cma15g00351 Cma-Chr15:1620441 Cma18g00178 Cma-Chr18:895429 1.54E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g772 . . . Bda15g00551 . . . . Cmo13g00910 Cmo18g00136 . Cma11g00091 . Car11g00083 Sed14g0033 Cpe20g00250 Cpe04g01563 Bhi02g00606 Tan09g2439 Cmetu02g1402 . . . . Cla06g01667 Cam06g1852 Cec06g1904 Cco06g1909 Clacu06g1811 Cmu06g1752 Cre06g2571 . . . . Lsi02g00383 Csa01g00863 Chy12g01259 Cme12g01683 . . . . . . . Bma08g00096 . . Cmo11g00090 Cma13g00879 Cma18g00178 Car13g00719 Car18g00169 Cpe09g01017 . Bhi08g01627 . . Lac10g0461 . . . Cla01g01310 Cam01g1420 . Cco01g1470 Clacu01g1375 Cmu01g1283 Cre01g1256 Lsi06g01560 Csa01g00144 Chy02g02585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006737 0 7 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00178 Cma_Chr18 FPKM 6.905415 7.508078 3.923499 3.933211 35.658485 34.336567 38.085129 8.487948 8.549801 9.207246