Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00183 ATGCATGCAAAACAGTGGACCCTCTTCACCATATTATTCCTGCTTTTCTCCTTCTCTTTAATCGCCTCTGCCGTCGACCATCAAGGCCAAACTCTCCTATCATGGAAACAATCTCTGAACTTATCGGCCCAAGAGTTGAACAATTGGGATTCAAATGATGAAACTCCTTGTGACTGGTTTGGAATCACCTGCAACTTCAAACGGGAAGTTGTGGAAATGGAATTCAGGTACGTGGAATTGGGGGGTAGAATTCCCACTAATTTTAGCTCATTGTTGACCCTGAACAAGCTCATCTTGGTGGGAACAAACCTCACTGGTTCAATTCCTAAAGAGATTGGCGATCTAAGAGAATTAAATACATTGGACCTGAGTGGCAATGGCTTGACAGGAGAAATCCAAATTGAGATATGTGGTTTGCTCAAGCTCGAAAATGTCGATCTCAGCTCAAATAGACTTGTGGGCTCGATACCAGCTGAAATTGGGAATCTTACGATCCTTAAAGAGCTTGGTCTTCATGATAATCAACTTAGCGGTCAAATTCCCAGAAGCATAGGTAACTTGAAGCAGCTTAAGGTGATCAGAGCTGGTGGGAACAGAGACATGGAAGGCAATATACCTCCAGAAATTGGGAACTGTACCAATTTGGTTTATGTAGGCTTTGCAGAAACCAGAATTTCAGGCTCTCTGCCACCCAGTTTAGGCTTGCTCAAGAAGCTCAAAACACTCGCATTGTACACAACCTTTCTCTCTGGCCAAATTCCTCCTGAAATTGGAAACTGCAGTGAGCTCCAACACATGTTCATCTATGAGACATCGCTCGCAGGCTCGATTCCAACCAGTTTCGGGAATCTCCAGAACCTGCAAAATCTGTTTCTATATAGGAACAGATTGATGGGCACGTTGCCAAAGGAGCTTGGAAACTGTCATCAATTATTGAGTATTGACATTTCAATGAATTCTTTGACGGGAAGCCTTCCAACCACATTTGGTAACGTGACTTCGCTACAAGAATTGAACTTGGGAATGAACAATATATCAGGCGAGATCCCAGCCGAGATTGAGAATTGGAGGGAACTTACTCACTTGATGCTTGACAACAACCAAATCATGGGTTTGATACCATCAGAACTAGGGAATTTAAAAAATTTGAGAACGTTATTCTTGTGGCATAACAAGCTCGAGGGAAGTATTCCGTTTTCAATTTCTAGCTGCCAGATGCTTGAAGAGATGGATTTATCAGTCAATAGCTTGACAGGCCACATTCCTGGAGAAATTTTCCAACTCAAGAAGCTTAACAGCCTCATGCTCATCTCCAACAATCTTTCGGGCGTTATACCTCCAGAGATCGGAAATTGTTCATCGCTAAATCGTTTCAGAGTTAACAAGAACATGCTTTTCGGCGCTCTCCCACCCCAGATTGGGAATTTGAAGAATCTGAGTTTCTTAGACCTTGGAGAGAATCGGTTCTCTGGAGTAATACCTGATGAGATTTCTGGGTGCAAGAATCTAACATTCATCGATATACACTCCAATTATATTACTGGAGCTTTACCCTCAGGTCTCAGCCACCTTATTTCCCTTCAAATCATCGACTTCTCGAACAATTTAATTGAAGGGAATCTAAATCCTGGTCTCGGACTGTTGAGCTCGCTCACAAAACTCATTCTGTACAACAATCGATTTTCCGGCCCAATCCCAAGTGAGCTCGGTTCCTGCTTGAAGTTACAATTATTGGACCTGAGTGTTAATCAACTTTCCTGTAATCTTCCGGGAAAGCTGGGAGAAATTCCGGCGCTGGAGATCGCTCTAAACCTAAGTTGGAACCAACTTGAAGGCGAGATACCGAAGGAGTTCGCTTATTTAGACAGACTCGGAATCTTGGATCTCTCACACAACCACCTCAGCGGCGACCTCCAAATCATCGCCGTAATGCAGAATCTTGTGGTACTCAACATCTCCGATAACAATTTCTCAGGCCGAGTTCCGATGACTTCCTTCTTCCGAAAACTCCCTCCTAGCGTTCTCTCCGGTAATCCAGATCTCTGCTTTGGCAGCCAGTTCACCGACGAAAATGGAGGCAAAAACTCAAGGCGTGAATCAGCGTCTCGCATAGCAGTGGTGGTGCTACTGTGCATAGCTTGGACGCTTCTCATGGTGGCGTTTTACATGAGCTTCGGATCGAAAAAAAGGGCCCAAAGACGCTTCTACGACGACCACGACGGCGACGGCGTCGATAGCAACTTGGAGATTGGCAATGAACTCGAATGGGAGATGACGTTCTATCAAAAGCTCGACCTATCAATATCTGACGTCGCAAAGAAACTGACAGCTGGCAACATCCTCGGCCGTGGCCGATCCGGCGTCGTTTACCAGGTCAACATCCAGCCCGGTTTAACAATTGCCGTCAAACGGTTCAAGACATCGGAGAAGTTCGTCGCCGCCGCATTCTCCTCTGAGATCTCAATTCTAGCCAGTATCCGACATAGGAATATCATCCGGTTGCTCGGTTGGGCAGCAAATCGGAAAACGAAATTGCTATTCTACGACTACTGGCCACACGGAAGCCTTGGCGATCTGTTACACGAGCGGTGCTCTAGTGGATATGTAATCAGCTGGAATGCTCGGTTAAAGATCGCCATCGGCGTGGCAGATGGATTGGCTTACTTGCATCACGACTGCGTTCCCGCGATTTCGCATCGTGACGTGAAGGTCCAAAATATACTGTTGAGTGATGAATACGACGCGTGCCTCACAGATTTTGGATTCGCTAGATTCATTGAAGACAATCCGAACAACTCCTCGTCGGCAAATCCACAATTCGTCGGATCTTATGGCTACATTGCACCCGAGTATGGTCGCATGCTAAAAGTAACAGAAAAAAGCGATGTGTATAGCTATGGAATCGTACTTTTAGAGATGATTACCGGAAAAAAGCCTGCTGATCCTTCATTTCCAGAAGGCCAACACATAATCCAATGGGTTCAGCATCATCTATACAGCCAGAAAGATCCAATCGAGCTTCTGGACCCAAAGCTTACGATCCATCTCGACGCGGAAGTTCAAGAAATGTATCAAGTCCTCGAAATCGCTCTTCTGTGCGCCTATCATCGCGCCGATGATCGCCCGACAATGAAGGACGTTGCTGCATTATTGAGAGGAATTCGAACCGACTCAACAATGATGACGATCAAGGGCAACAAACGTAGTAATAGGCTGAAGAGATTCGAAATTCAGTCGTATTAG 3243 45.42 MHAKQWTLFTILFLLFSFSLIASAVDHQGQTLLSWKQSLNLSAQELNNWDSNDETPCDWFGITCNFKREVVEMEFRYVELGGRIPTNFSSLLTLNKLILVGTNLTGSIPKEIGDLRELNTLDLSGNGLTGEIQIEICGLLKLENVDLSSNRLVGSIPAEIGNLTILKELGLHDNQLSGQIPRSIGNLKQLKVIRAGGNRDMEGNIPPEIGNCTNLVYVGFAETRISGSLPPSLGLLKKLKTLALYTTFLSGQIPPEIGNCSELQHMFIYETSLAGSIPTSFGNLQNLQNLFLYRNRLMGTLPKELGNCHQLLSIDISMNSLTGSLPTTFGNVTSLQELNLGMNNISGEIPAEIENWRELTHLMLDNNQIMGLIPSELGNLKNLRTLFLWHNKLEGSIPFSISSCQMLEEMDLSVNSLTGHIPGEIFQLKKLNSLMLISNNLSGVIPPEIGNCSSLNRFRVNKNMLFGALPPQIGNLKNLSFLDLGENRFSGVIPDEISGCKNLTFIDIHSNYITGALPSGLSHLISLQIIDFSNNLIEGNLNPGLGLLSSLTKLILYNNRFSGPIPSELGSCLKLQLLDLSVNQLSCNLPGKLGEIPALEIALNLSWNQLEGEIPKEFAYLDRLGILDLSHNHLSGDLQIIAVMQNLVVLNISDNNFSGRVPMTSFFRKLPPSVLSGNPDLCFGSQFTDENGGKNSRRESASRIAVVVLLCIAWTLLMVAFYMSFGSKKRAQRRFYDDHDGDGVDSNLEIGNELEWEMTFYQKLDLSISDVAKKLTAGNILGRGRSGVVYQVNIQPGLTIAVKRFKTSEKFVAAAFSSEISILASIRHRNIIRLLGWAANRKTKLLFYDYWPHGSLGDLLHERCSSGYVISWNARLKIAIGVADGLAYLHHDCVPAISHRDVKVQNILLSDEYDACLTDFGFARFIEDNPNNSSSANPQFVGSYGYIAPEYGRMLKVTEKSDVYSYGIVLLEMITGKKPADPSFPEGQHIIQWVQHHLYSQKDPIELLDPKLTIHLDAEVQEMYQVLEIALLCAYHRADDRPTMKDVAALLRGIRTDSTMMTIKGNKRSNRLKRFEIQSY 1080
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 938258 941945 - CmaCh18G001830.1 Cma18g00183 313521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00183 1080 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Cma18g00183 1080 SUPERFAMILY RNI-like 325 667 - -
Cma18g00183 1080 SUPERFAMILY Protein kinase-like (PK-like) 756 1051 IPR011009 -
Cma18g00183 1080 SMART LRR_typ_2 163 187 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 115 139 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 284 308 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 548 572 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 476 500 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 332 356 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 380 404 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 644 677 IPR003591 -
Cma18g00183 1080 SMART LRR_typ_2 428 452 IPR003591 -
Cma18g00183 1080 Gene3D Phosphorylase Kinase; domain 1 752 850 - -
Cma18g00183 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Cma18g00183 1080 Pfam Protein kinase domain 778 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00183 1080 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cma18g00183 1080 Gene3D Transferase(Phosphotransferase) domain 1 852 1076 - -
Cma18g00183 1080 SMART serkin_6 775 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00183 1080 ProSiteProfiles Protein kinase domain profile. 775 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00183 1080 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Cma18g00183 1080 SUPERFAMILY RNI-like 75 417 - -
Cma18g00183 1080 PANTHER OS01G0170300 PROTEIN 8 1063 - -
Cma18g00183 1080 Gene3D Ribonuclease Inhibitor 200 446 IPR032675 -
Cma18g00183 1080 Gene3D Ribonuclease Inhibitor 24 199 IPR032675 -
Cma18g00183 1080 Gene3D Ribonuclease Inhibitor 447 687 IPR032675 -
Cma18g00183 1080 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 1063 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00183 - - - csv:101205934 1773.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00083 Cma18g00183 CCT
Cma10g00113 Cma18g00183 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00118 Cma-Chr17:586539 Cma18g00183 Cma-Chr18:938258 0 dispersed
Cma10g00113 Cma-Chr10:477560 Cma18g00183 Cma-Chr18:938258 0 wgd
Cma11g00083 Cma-Chr11:405029 Cma18g00183 Cma-Chr18:938258 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g792 . . . . . . . . . Cmo18g00141 Cma10g00113 Cma11g00083 Car10g00102 . . . . Bhi02g00489 . . . . . . Cla06g01679 . . . . . . Cone2ag0922 Cone16ag0085 . . Lsi02g00394 Csa01g00871 . Cme12g01675 . . . . . . . . . Cmo10g00117 Cmo11g00084 . Cma18g00183 . . . Cpe18g00852 Bhi08g01644 . . . . . . Cla01g01317 . . . . . . Lsi06g01569 Csa01g00130 Chy02g02597 Cme02g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002837 0 2 0 0 0 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 3 2 3 2 1 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69269 PF00069 Pkinase 5.00E-41 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00183 Cma_Chr18 FPKM 0.145429 0.166285 0.454067 0.604157 0.445425 0.656986 0.70546 0.098904 0.067054 0.101042