Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00185 ATGGGATCATCATCAAGAACAGAAACAAGCCATTACTACAGCCCTTGTGCAGCCTGCAAATTCCTCAGAAGAAAATGCATAGCAGGGTGTGTTTATGCGCCATATTTTCCACCAGAGGACCCTCAAAAATTTGCCAATGTTCATAAGGTTTTTGGTGCAAGCAACGTAGCCAAGCTGCTCAATGAAGTTCTTCCTCATCAAAGACAAGACGCCGTCGTTTCACTTGCCTATGAAGCCGAGGCTAGAATAAAAGATCCTGTTTATGGCTGTGTCGGTGCCATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAGGAGCTCGATGCAGCTAAAGCTCGTCTTCGTCTCTTCTCTTTCACTGACTTTTCAGCTCCCTTTTCATCTCAGCCTCAGATCATTAGCCCTCCTATGATTTGGAATAGCAACAATTATGATATCGTTTATGCTAATTCTTCTATGTACTTTAATGGAGGAATTTAA 483 42.65 MGSSSRTETSHYYSPCAACKFLRRKCIAGCVYAPYFPPEDPQKFANVHKVFGASNVAKLLNEVLPHQRQDAVVSLAYEAEARIKDPVYGCVGAISFLQKQVQRLQKELDAAKARLRLFSFTDFSAPFSSQPQIISPPMIWNSNNYDIVYANSSMYFNGGI 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 954033 954515 - CmaCh18G001850.1 Cma18g00185 313523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00185 160 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cma18g00185 160 Coils Coil 94 114 - -
Cma18g00185 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 137 - -
Cma18g00185 160 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cma18g00185 160 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 9 137 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00105 Cma18g00185 CCT
Cma11g00077 Cma18g00185 CCT
Cma11g00077 Cma18g00185 ECH
Cma10g00105 Cma18g00185 ECH
Cma13g00866 Cma18g00185 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00185 Cma-Chr18:954033 Cma20g01123 Cma-Chr20:8866401 4.44E-47 dispersed
Cma10g00105 Cma-Chr10:429384 Cma18g00185 Cma-Chr18:954033 1.09E-64 wgd
Cma11g00077 Cma-Chr11:374968 Cma18g00185 Cma-Chr18:954033 1.38E-61 wgd
Cma13g00866 Cma-Chr13:7097857 Cma18g00185 Cma-Chr18:954033 8.94E-97 wgd
Cma18g00185 Cma-Chr18:954033 Cma04g02687 Cma-Chr4:18208584 2.60E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36743 PF03195 LOB 3.00E-41 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00185 - - ahf:112722314 202.986