Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00191 ATGGAGCCTGTTCTTGTGATTAAGGTTAAATATGGAGTGATGCTACGGCGTCTCAGTGTTAGAATCCTTGAAAACAATAAGCTGGATCTTGACATCAATGGATTAAGAGCAAAAGTACCTAGTCTCTTCAAATTCTCCTCTGATACTGATTTTACACTGACTTACATTGATGAAGATGGTGATACAGTGACCTTGTTCAATGATCATGATCTACATGACATGATGAGGCAACAGCTGAGGTTTCTGAGAATTGATGTGCATCTTAACCAATCCCATGATAGATCCGATGGAAGCTCAACCACGCCATTGCGTTCTTTTCAAGATATTCGTACTGGTATTTCTGAGGTTTTGAAATCTCTGCCAGAGCCCCTACCGGAGATTTGTTCACAGTTGCTCGACATCGCTTCAAAAGCCATGGTTACTGGCCCTGCACTTGATGAGCTTGCTCAAACCATTCTTCAGTTGAAAGACGCGCACCTGAACTCAGATTCGCAGCCCTCATCTGTTCCTGAGACAGTTGTGGCCACTGAGAGTTCTGATGCTCCTCCTGGTTTAGATGCAACTGTTTCAGTTGATCATAATGCCCTTCCTCGTGATCCTATTTGGAAATCAGATACAACTGCCCATTGCAGCAGCTGTTCCTTTGATGCATTTCATGATCCCCTTCGTAGAATGCATATGCACGGTCCTATGTCGATGCACAATTACCCATATCATTCACCAGCAGCTTATCTAAATGATAATCGTATGAAGGAGAGGCCTATGAGAGGATTACCCCTGGTTTCTGGACCAATTAGCGACAGTGGTTACTTCCAAACTATGGGAAAAGTCTTCCCTGGAGGTCCAATGAATTACAGCAGTGGTAGCAGCATTGAATCAATGGGAAGTATGTTCCATAAAGGTGTTATTTGTGATGGCTGTGGGGCTCGTCCGATCACCGGTCCACGGTTCAAGTCCCAAGTGAAAGATAATTATGATCTATGTAGTATCTGCTTTGCTAAAGTGAGCAATGTAGCTGAATACGTTAGGATCGATCGACCCGTCTCTTGTCAGTATCCAAGATTGAAAGCATTCAATCCAGTGCAGCAGCATCCATTTCCTGGCTCCCGAACAATCGATACACTGAAAAGTTCTGGAAAGCAGACCAAACTTTTTGCTGATACTAACGTCATGGATAATTCTGTGATCGCCCCATCTACGCCGTTTACCAAGAAATGGCAGTTGCATAACCTCGGGAGTTGGAATTGGCCCCGTGGTACACAGCTAGTGTGGGATGGAGGAGACAAGTTTAGTGATTCAACATCATTTGAGATACAGGTACCTGCGGGAGGACTTCCTCCGGGACATCAAGTTGATATTGAAGTTGACTTTACTTCCCCTCCATTATCTGGTCGGTACCTCACATACTGGAAGGTAGTATCTCCATCTGGCCAGGAGTTCGGGTATCGTGTTTGGCTTCTCATACAGGTTGATGCAGCTCTTAAGAGGCCACATTCTGATAATCTCCAAGCTTTGGACCTAAATTTTCCCCCTAACGTTGTAGACCCAAATGGCCAAGAAGATCTAAACAAGGATTTGGAAACTCTACTTTCTGATAAGCTTTTCCCTCGTGATCCCATCCCCATTGCCAAACCAGTAAAACCTTGTCCTAAAACTGCGATCGCGCAACAACATGACCTGATCGACGAGTTGCTAGTTCGCAAGAGCCCTGCTAATCCCCAAGATCTAAACAATAATTTGGATAAGTTATTCCCTCCTCGTGATTCCACCCCCATTGCCAAACCAGTAAAACCTTGTCATAATCTGCCTGAAAATGCGATCGAGCAACAACAGGACCAACAGGACGTGATGGACAAGTTGCTAGCTAGCAAGATTCCTGCTAATTTGGTCTCTTATCCAACTGTTGATTACCATGGAGTTCGAGATAGTTCAACAGCCAAGGCCCCCTCTGTGTCATACCCTCATATTGATTCTTCTGAACTAATTCCCCCTGCTGCAAACCGATCTCCAAGACCATCCCCCATGCCTTCTCATTCTCCAGCATTATCTGAAGATATCAGTTCTAATCATTATATCCAAGGACCTCTACTTCAGGCACTCTGTGAAATGGGATTCAAACATACCTATCTGAACAAGGAGGTACTGAAGAGGAATGGGTACAATCTAGAGAAGTCAGTGGATGAACTGTGTGGGCTTCCTGAATGGTATCCGATGATTCAGGAGTTGGATAAAATGGGATTCAAGGATAAGGAAATGAACAGAAAACTTCTGATGAAGAACAATGGCAGCTTGAAGCGAGTAGTGATGGAACTTTTGATGAAGAACAATGCTTAG 2334 44.26 MEPVLVIKVKYGVMLRRLSVRILENNKLDLDINGLRAKVPSLFKFSSDTDFTLTYIDEDGDTVTLFNDHDLHDMMRQQLRFLRIDVHLNQSHDRSDGSSTTPLRSFQDIRTGISEVLKSLPEPLPEICSQLLDIASKAMVTGPALDELAQTILQLKDAHLNSDSQPSSVPETVVATESSDAPPGLDATVSVDHNALPRDPIWKSDTTAHCSSCSFDAFHDPLRRMHMHGPMSMHNYPYHSPAAYLNDNRMKERPMRGLPLVSGPISDSGYFQTMGKVFPGGPMNYSSGSSIESMGSMFHKGVICDGCGARPITGPRFKSQVKDNYDLCSICFAKVSNVAEYVRIDRPVSCQYPRLKAFNPVQQHPFPGSRTIDTLKSSGKQTKLFADTNVMDNSVIAPSTPFTKKWQLHNLGSWNWPRGTQLVWDGGDKFSDSTSFEIQVPAGGLPPGHQVDIEVDFTSPPLSGRYLTYWKVVSPSGQEFGYRVWLLIQVDAALKRPHSDNLQALDLNFPPNVVDPNGQEDLNKDLETLLSDKLFPRDPIPIAKPVKPCPKTAIAQQHDLIDELLVRKSPANPQDLNNNLDKLFPPRDSTPIAKPVKPCHNLPENAIEQQQDQQDVMDKLLASKIPANLVSYPTVDYHGVRDSSTAKAPSVSYPHIDSSELIPPAANRSPRPSPMPSHSPALSEDISSNHYIQGPLLQALCEMGFKHTYLNKEVLKRNGYNLEKSVDELCGLPEWYPMIQELDKMGFKDKEMNRKLLMKNNGSLKRVVMELLMKNNA 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 990409 994566 + CmaCh18G001910.1 Cma18g00191 313529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00191 777 ProSiteProfiles Zinc finger ZZ-type profile. 299 349 IPR000433 GO:0008270
Cma18g00191 777 PANTHER PROTEIN JOKA2 1 176 - -
Cma18g00191 777 PANTHER PROTEIN JOKA2 639 772 - -
Cma18g00191 777 PANTHER PROTEIN JOKA2 235 521 - -
Cma18g00191 777 ProSiteProfiles PB1 domain profile. 4 89 IPR000270 GO:0005515
Cma18g00191 777 Gene3D - 687 733 - -
Cma18g00191 777 Gene3D - 2 88 - -
Cma18g00191 777 SUPERFAMILY UBA-like 735 772 IPR009060 GO:0005515
Cma18g00191 777 CDD NBR1_like 386 491 IPR032350 -
Cma18g00191 777 Pfam PB1 domain 7 87 IPR000270 GO:0005515
Cma18g00191 777 Gene3D Immunoglobulins 378 494 IPR013783 -
Cma18g00191 777 Pfam Ig-like domain from next to BRCA1 gene 389 490 IPR032350 -
Cma18g00191 777 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 725 775 IPR015940 -
Cma18g00191 777 SUPERFAMILY CAD & PB1 domains 5 88 - -
Cma18g00191 777 SMART zz_5 298 343 IPR000433 GO:0008270
Cma18g00191 777 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 639 772 - -
Cma18g00191 777 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 235 521 - -
Cma18g00191 777 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 176 - -
Cma18g00191 777 MobiDBLite consensus disorder prediction 643 685 - -
Cma18g00191 777 Gene3D - 734 776 - -
Cma18g00191 777 CDD UBA_NBR1 734 772 - -
Cma18g00191 777 Pfam Zinc finger, ZZ type 299 337 IPR000433 GO:0008270
Cma18g00191 777 Gene3D - 292 350 IPR043145 -
Cma18g00191 777 SUPERFAMILY RING/U-box 296 348 - -
Cma18g00191 777 SMART PB1_new 4 89 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00191 K17987 NBR1; next to BRCA1 gene 1 protein - csv:101205935 639.032
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00862 Cma18g00191 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00862 Cma-Chr13:7077823 Cma18g00191 Cma-Chr18:990409 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g826 Blo04g00719 . . . . . . . Cmo13g00893 Cmo18g00152 . . . . . Cpe20g00262 . . . . . . . . . . . . . . . . . Cone13ag0168 Cone19ag0165 . Csa01g00883 Chy12g01240 Cme12g01663 . . . Bda14g00797 . Bpe15g00653 Bma03g00769 . Sed01g1623 . . Cma13g00862 Cma18g00191 Car13g00705 Car18g00183 Cpe09g01004 . Bhi08g01660 Tan05g1970 Cmetu12g0808 . . . . Cla03g00287 Cam03g0304 Cec03g0298 Cco03g0313 Clacu03g0305 Cmu03g0915 Cre03g0607 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004955 1 2 1 1 1 2 2 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 0 1 1 0 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00191 Cma_Chr18 FPKM 4.065964 3.863248 12.859629 12.299644 0.477866 0.730396 0.857654 15.380551 14.439435 15.696098