Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00193 ATGTCTCAGGATTTGTCTTTGGATCAAGACCCAGATGAATCTGATCCTGAGTTCGTGGAGATTGATCCTACAGGTCGATATGGACGGTATAAGGAAATTTTAGGGAAAGGGGCATTCAAGAAAGTATATCGGGCTTTTGATGAATTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAAGTAACAGATCTATTACGGAATTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTCAAGACATTGAAACACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAGAATGAAAACATCAACTTCATTACTGAGATATTCACTTCAGGGACACTTCGACAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCACTGAAAAAGTGGTCTAGGCAGATATTAGAGGGCCTTTTGTATCTTCATAGTCATGACCCTCCGGTTATTCATAGAGATTTGAAATGTGACAATATCTTTGTCAATGGCAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCTGCCATTCTTCAACAAGCTCGTTCGGCTCACAGTGTCATTGGGACGCCAGAGTTTATGGCTCCAGAGTTGTATGAGGAGGAATACAATGAACTTGTGGATATTTATGCTTTTGGGATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCGTATATTGAATGTGCAAATGCTGCTCAAATCTATAAGAAGGTCACATCAGGGATAAAACCAGCTTCATTGGCAAAGGTCACCGATGGGGGAGTTAGAGCATTTATAGAAAAATGTATTGCAAATGTCTCCGATCGCTTGCCTGCAAAAGATCTTTTAAGAGATCCATTTCTTCTAGCAGATGAAGATCATGAAAGTATATCACGTCATCTACATCCCAAAATACACCATAAAGAAAAAAGAGAAAAAATTGATACTGATAGAAGCGTAGATGATACTCCTGCTACTAGCGTAGACTTCAGCATGCATGGTCAAAGAAAAGATGTTAACAAGATATTTCTCAAACTAAGAATTGCAGACTCCATGGGTAATTTTCGCAATATCCATTTCCCATTTGATATTGAAGCCGACACATCAATTTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGATCTTTCAGATCAAGATGTCTCTACGATTTCTGAAATGATCGAAACTGAAATTCGGTCGTATATTCCAGATTGGACATTAGTTGAATATCCTGTAGATAATGTAGGAGCAGAAGTTGTCATTTCTGATAGCTCTCCATCTGATTCAAGAACTGCTGCCTCTCCCTTATCTATAGAATCTGGTAACCTTGCATTAGAGGTCCTGCCTTCAGGTCGCAAGTATTGGTCCGACTCGCCGAAGGGAATGGGCGGGTGCTCTCCTGTTAAGCCAGGTCCTTCAAACTTGTCTTTTGCCTCAGAACAGAATGTTGAATCCTCTAGTAGCCACATGCACGAGGATAACATAGATCATGCAGCCATAATCATGGGACTAGAAAATGAGCTTTTGTCTGAAGATGGTGCTAATGATGGGCAGGATGAGAGTATATTAACTACAGATATTCATGCTAGCTCTGAGGCACATCCCTCAGATTATGATGAATCAATTGGCATCGAGATAATGACCGAAAAACTTGAACTTTTGTTGACACAGCAAAAAGAAGAATTAGTTGAACTGAAAACCAAACAGAAATTAGCCATTTCAGAGCTTCTGGCTGAACTTACACCTGAGACCCATCAGAAAGTTTTGGCGATATGTAAGCTTAAGCATTCTGATATCACCAGTGGAAGAACACTATGCAGATGGATACAGCTTCCCCGGCAGCTGATTAGTGAGTGA 1851 39.82 MSQDLSLDQDPDESDPEFVEIDPTGRYGRYKEILGKGAFKKVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDGGVRAFIEKCIANVSDRLPAKDLLRDPFLLADEDHESISRHLHPKIHHKEKREKIDTDRSVDDTPATSVDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTSISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWTLVEYPVDNVGAEVVISDSSPSDSRTAASPLSIESGNLALEVLPSGRKYWSDSPKGMGGCSPVKPGPSNLSFASEQNVESSSSHMHEDNIDHAAIIMGLENELLSEDGANDGQDESILTTDIHASSEAHPSDYDESIGIEIMTEKLELLLTQQKEELVELKTKQKLAISELLAELTPETHQKVLAICKLKHSDITSGRTLCRWIQLPRQLISE 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1004778 1010220 - CmaCh18G001930.1 Cma18g00193 313531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00193 616 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 7 596 - -
Cma18g00193 616 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00193 616 Coils Coil 546 566 - -
Cma18g00193 616 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cma18g00193 616 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00193 616 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00193 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Cma18g00193 616 Gene3D Transferase(Phosphotransferase) domain 1 111 292 - -
Cma18g00193 616 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Cma18g00193 616 Gene3D - 338 405 - -
Cma18g00193 616 CDD STKc_WNK 26 286 - -
Cma18g00193 616 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 596 - -
Cma18g00193 616 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 342 396 IPR024678 GO:0004674|GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00858 Cma18g00193 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01310 Cma-Chr15:8251622 Cma18g00193 Cma-Chr18:1004778 1.61E-155 dispersed
Cma17g00238 Cma-Chr17:1210638 Cma18g00193 Cma-Chr18:1004778 2.92E-171 dispersed
Cma18g00193 Cma-Chr18:1004778 Cma20g00310 Cma-Chr20:1534263 5.91E-162 dispersed
Cma13g00858 Cma-Chr13:7061331 Cma18g00193 Cma-Chr18:1004778 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69270 PF00069 Pkinase 1.50E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00193 K08867 - csv:101206177 1010.75