Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00195 ATGGAATTGAGGATTAGCAGGGAGAATACCAGAGAAATGGCGAAATTAGGGCACATAATCGTGCAAAAGAGACTGGCAAATTCTCGGCCCAAGGCTCTGCAGCAGGCGCCAGATTTGACTGATTTTATGAACGATATGTTCTTCGGAAGCGTGAAAAAGGATAAGAAGGCCTATAATTTGACTGGTGATGAAAATGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATCGTTTGATCGGAGTAATAAAAGTAGAAATAGCCTATTGACGGAGGAGTGGCTAGATGAGGCGCGCCGGTTGGTGGCTTCTTCTCCTTCGCGGCCTAATTCGCCGGCTCGGTTCGTCGGATCGCCGAGGTTTGCGGCGGCCAACGGCAGATCGTCAGCTTTGATCAATGATCGGAGAGATCCACTCTCAAGGTCCGCTAGAAGGCACAGAGCTGTGGACAATTTCAGCGGTGAGATCCTCTCTAAAGTTGTTCGCCATAGCCGCAACAAATCAGAATCCTTCTCAATCTCCTCCGCCGCCGTGGAGGAGCCGAAAAATCCTTCTTCCGCCGTTCAGAAATGGATATCCAACGTCCTCAAACCCTCCAATCCCCCAATCTCCGATCCTCCTCCCACTACTCGCAAATCTCGGTTCCACACCGATCTTCCCCCTTCTCGCCTCCCAATTCCTCCGCCGGATGCCCTTCTTTCTCCCCCGAAGACCCTAACGAATCCGCCGCCGAGAAGAACGGTCTCGTCGCCGGCCTGTTCGATTCAATCGATTAGACCTAAATCCAATCTAAATGGGTTCTCGAGGGACGATTCTGAAGATCTGGAGTTTGGCCTTAATGGGTTCCTTAAAGAGCAGCGTAGCAAAATTCAGCAAATCTCGGATGGGCAGCTTAATGTTGAAGTTAAAATCATTCTATCCGGAACTTCAAACAGCACTAGTTCAATGGTAGCGGCAGTGTGCTATGCCTGGCTACTAGAGAACAAAATGAGGCAGAGTAATGCAGAGAGCGGCCGAGTGTGTCTTGTGGTGCCTGTGATGAATATGCAGAGGGGAAATATGTGGAACCAACGGCAGGTTGCTTGGCTCTTTTATCACCTTGGACTCGATGCTTCCTCGATTCTTTTCACTGATGAGGTGGACTTAGAAAGTCTGATGATGGCTGGTCGAACTAGCGTCCTCGTCGTAGGGCACGATGTCCTTAAGATGAGTGATGGGGTTGGATCTCAGTGCACCATTCTTACTGATAACTATTGTGAGGATGCCTATCATTTGCTTCAAACTCCTTTGTTGAAGAATCTCTTGCTCGCAGGAATTCTGTTGGACACAAAAAATCTTGATGGATCGGCTCAATCATCGATGACGAGAGATGCCGAGGCTGTTCAGTTGCTATCGGTTGGCTCGGCACCAAATTGTAGGAACGGACTTTATGATCAGTTGATGCGAGTTCAAAAGGAGCGTCCATTTTTGGATGCCTTGCAGCAAAGTTATGGAAAGCCTCCTGATGACGGTAGCAACGATGACGCGAGGCATGTAGAGCGTATTATGGAGAGGAATCGAACATCCATCTCACCCCATGATGACACAATTAACCAACAAAAGAAACCTAATGATTTTGGAACTGCCAAAACTTGCAGGGCTTCGCCGAAATCCGTTTGTTACCTATTCAAACACCGGCTAGAGAAACACCCAACATATCTCGTGGAAAGAATAAAAACTTCCTGGCAAAATGGTTCGGTTTTGGGTCGAAATGAGATAAGATTGGCTCGGCTCCAAGATCTCCTCTCAGCTAGAGATTCAGTAGCTCTCCCCGAGTACGATCGCTCGAAATCCACCGTGAGAATGCAAAATTTTCCCAGAATTAATCAATTGGTACGAAGGCAAAGTTCCTACGCTCATTTTAAGCCGATTAGAGGTTACCCTCTAAATGGGGATGCTAGCAGTTGCTGCTCGGCGTCAATGTCGATGGAAAATAGTCTTACCAGCCTTCGTCTTTTTGCGAATCCATATGGGTCTTTGAATGGTTCCCTCTTCAGGTCTTTCTCGAAGTTGGGGAATCAATATCCGGAAGCCTTTAAAGATATGGGCTCTCAAATGGAATTTTTGCCTTCGGGAAAGCGTGTATCTTCAGCTTGTCCAGCATTCCAAAGTCCAAGGAAACATTTATTTCAGTTGGCAGAAATTGCAGCTCCTTTTTCTAGCAGGGGCATTGCGACAACAAGTTCGATGGAATCAGCTCCACAAGGATCTCCTGCAATTGATAGTGATATAACTCCTCGCATCAAATTTAAGAGGCTTGATAAAACCTCAAAACACATAATGCAGATTTTAGACAAGGAAGCTATTGAGGAGGTAAAAGCAAAGAGAGAAATTCCAGATATAAAACCAGGCTATATTGTGCAGCTCAAAGTGGAAGTACCTGAGAACAAGCGACGTGTCTCAACGTTGAAAGGCATTGTAATTGCCAGACGGAACGCTGGTCTAAACACAACTTTTAGATTAAGGAGGGTAGTTGCTGGTGTTGGGATTGAGTCTCTTTTCCCTTTATACTCACCAAACATAAAAGAGATTACGGTGTTGGACAAGAAGAAAGTGCGGAGGGCCAAGCTTTACTATCTTAGGGACAAAATGAACGCGCTTAAGAGGCATTAG 2661 46.3 MELRISRENTREMAKLGHIIVQKRLANSRPKALQQAPDLTDFMNDMFFGSVKKDKKAYNLTGDENEEEEEEEEEEEEEEESFDRSNKSRNSLLTEEWLDEARRLVASSPSRPNSPARFVGSPRFAAANGRSSALINDRRDPLSRSARRHRAVDNFSGEILSKVVRHSRNKSESFSISSAAVEEPKNPSSAVQKWISNVLKPSNPPISDPPPTTRKSRFHTDLPPSRLPIPPPDALLSPPKTLTNPPPRRTVSSPACSIQSIRPKSNLNGFSRDDSEDLEFGLNGFLKEQRSKIQQISDGQLNVEVKIILSGTSNSTSSMVAAVCYAWLLENKMRQSNAESGRVCLVVPVMNMQRGNMWNQRQVAWLFYHLGLDASSILFTDEVDLESLMMAGRTSVLVVGHDVLKMSDGVGSQCTILTDNYCEDAYHLLQTPLLKNLLLAGILLDTKNLDGSAQSSMTRDAEAVQLLSVGSAPNCRNGLYDQLMRVQKERPFLDALQQSYGKPPDDGSNDDARHVERIMERNRTSISPHDDTINQQKKPNDFGTAKTCRASPKSVCYLFKHRLEKHPTYLVERIKTSWQNGSVLGRNEIRLARLQDLLSARDSVALPEYDRSKSTVRMQNFPRINQLVRRQSSYAHFKPIRGYPLNGDASSCCSASMSMENSLTSLRLFANPYGSLNGSLFRSFSKLGNQYPEAFKDMGSQMEFLPSGKRVSSACPAFQSPRKHLFQLAEIAAPFSSRGIATTSSMESAPQGSPAIDSDITPRIKFKRLDKTSKHIMQILDKEAIEEVKAKREIPDIKPGYIVQLKVEVPENKRRVSTLKGIVIARRNAGLNTTFRLRRVVAGVGIESLFPLYSPNIKEITVLDKKKVRRAKLYYLRDKMNALKRH 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1013825 1023312 - CmaCh18G001950.1 Cma18g00195 313533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00195 886 MobiDBLite consensus disorder prediction 105 124 - -
Cma18g00195 886 PANTHER - 233 593 - -
Cma18g00195 886 MobiDBLite consensus disorder prediction 167 256 - -
Cma18g00195 886 MobiDBLite consensus disorder prediction 63 81 - -
Cma18g00195 886 MobiDBLite consensus disorder prediction 170 202 - -
Cma18g00195 886 MobiDBLite consensus disorder prediction 53 89 - -
Cma18g00195 886 MobiDBLite consensus disorder prediction 526 545 - -
Cma18g00195 886 Gene3D - 407 488 - -
Cma18g00195 886 Gene3D - 279 406 - -
Cma18g00195 886 Gene3D - 766 886 IPR038657 -
Cma18g00195 886 SUPERFAMILY Translation proteins SH3-like domain 783 882 IPR008991 -
Cma18g00195 886 PANTHER BNIP - RELATED 17 221 - -
Cma18g00195 886 Coils Coil 58 85 - -
Cma18g00195 886 PRINTS Ribosomal protein L19 signature 781 810 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cma18g00195 886 PRINTS Ribosomal protein L19 signature 840 863 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cma18g00195 886 PANTHER BNIP - RELATED 233 593 - -
Cma18g00195 886 Pfam Ribosomal protein L19 784 881 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cma18g00195 886 TIGRFAM rplS_bact: ribosomal protein bL19 785 880 IPR001857 GO:0003735|GO:0005840|GO:0006412
Cma18g00195 886 MobiDBLite consensus disorder prediction 528 542 - -
Cma18g00195 886 MobiDBLite consensus disorder prediction 224 245 - -
Cma18g00195 886 PANTHER - 17 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00195 - - - cmos:111456732 979.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00810 Cma-Chr6:4287044 Cma18g00195 Cma-Chr18:1013825 3.60E-30 dispersed
Cma13g00252 Cma-Chr13:2087628 Cma18g00195 Cma-Chr18:1013825 2.79E-141 dispersed
Cma18g00195 Cma-Chr18:1013825 Cma16g01110 Cma-Chr16:8541574 3.59E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g836 . . . . Bpe12g00672 . . . . Cmo18g00157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00149 . . . . . . Bma08g00079 . . . . Cma18g00195 . Car18g00188 Cpe09g00999 . . . . . . . . Cla01g01348 Cam01g1383 Cec01g1411 Cco01g1508 Clacu01g1414 Cmu01g1317 Cre01g1225 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004587 2 3 1 0 1 1 1 1 1 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 2 1 1 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00195 Cma_Chr18 FPKM 10.09376 9.989773 9.671981 9.739667 11.262278 8.824245 10.052732 15.820683 14.538556 16.483976