Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00197 ATGGCCTCTGCAAATGGAATAGGTCATATTCAAGGAAAGCAGCCATTATTTTCTTTTGGTGTTATCGCCGACGTTCAGTATGCTGATATTCCCGATGGTCAATCATTCCTCGGTACTCCCCGTTATTATCGACATAGTATTCTCGTCCTGAGAAGGGCAGTTCAAAACTGGAACAACCAACAAAGGCTTAAATTCGTCCTAAATTTTGGAGATATTGTTGATGGATTTTGCCCCAAGGACCAATCTCTCAAGTCTATAAAGAAAGTTGTTAGTGAATTTGATAACTTTAATGGTCTAGTTTATCATATGATTGGAAACCATTGCCTCTACAATCTCCCTCGTAAAGAATTGCTTCCATTGTTGAAGATTCCAATACTTGAGGGAGGTCATGCTTATTACGACTTTTCGCCTACTCCAGATTTCAGATTCGTCGTACTCGATGGCTACGATATAAGCGCTATCGGTTGGCCTAAGGGTCATCCTAATTCAGTAGAAGCTCTCAAAATTCTATCCCAAAAAAACCCAAATGCAGACAAGAACAGCCCCTCAGGATTGACTGGCTTAGATAGAAGATACCTTATGTTCAACGGAGGAGTTGGTAAAGAACAGTTGAAATGGTTAGATAGTATACTTCAGGAAGCCACAAATTTAAAGCAAAAAGTGATTGTTTGCTGTCATTTGCCTCTTGATCCTGGGGCGACATCTTTTGCAGCACTTTTATGGAACTACGACGAAGTAATGGACCTGATACATAGCTACAATTGTGTGAAAGTTTGCCTAGCTGGGCACAATCATAAGGGTGGATATGCCATTGACTCCCATGGAATACACCATAGAGTTCTTGAAGCTGCCCTCGAATGCCCCCCCGGCACCTATGCGTTCGGGTACATTGATGTATTTAGTGATGGTCTATATCTTACTGCTACAGATCGGATGAGTTGCTCGAAAATGCTTTTCGATTCCGCTTGTGACTGTGAGAATGGCTACATTACAACTTCTACATCATAG 1008 41.57 MASANGIGHIQGKQPLFSFGVIADVQYADIPDGQSFLGTPRYYRHSILVLRRAVQNWNNQQRLKFVLNFGDIVDGFCPKDQSLKSIKKVVSEFDNFNGLVYHMIGNHCLYNLPRKELLPLLKIPILEGGHAYYDFSPTPDFRFVVLDGYDISAIGWPKGHPNSVEALKILSQKNPNADKNSPSGLTGLDRRYLMFNGGVGKEQLKWLDSILQEATNLKQKVIVCCHLPLDPGATSFAALLWNYDEVMDLIHSYNCVKVCLAGHNHKGGYAIDSHGIHHRVLEAALECPPGTYAFGYIDVFSDGLYLTATDRMSCSKMLFDSACDCENGYITTSTS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1030468 1031475 - CmaCh18G001970.1 Cma18g00197 313535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00197 335 PANTHER MANGANESE-DEPENDENT ADP-RIBOSE/CDP-ALCOHOL DIPHOSPHATASE 1 321 - -
Cma18g00197 335 SUPERFAMILY Metallo-dependent phosphatases 15 312 IPR029052 -
Cma18g00197 335 Gene3D - 12 312 IPR029052 -
Cma18g00197 335 PANTHER - 1 321 - -
Cma18g00197 335 CDD MPP_Nbla03831 17 302 IPR041869 -
Cma18g00197 335 Pfam Calcineurin-like phosphoesterase 17 266 IPR004843 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00197 K01517 ADPRM; manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [EC:3.6.1.13 3.6.1.16 3.6.1.53] - csv:101207870 593.964
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00761 Cma18g00197 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00761 Cma-Chr13:6609931 Cma18g00197 Cma-Chr18:1030468 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g848 . . . Bda15g00537 Bpe12g00673 . . . Cmo13g00791 Cmo18g00159 . . . . . Cpe20g00343 . . . . . . . . . . . . . . . Cone2ag0937 Cone16ag0066 . . Lsi02g00424 Csa01g00892 . Cme12g01655 Blo13g00151 . . . Bpe07g00862 . . Bma08g00078 Sed08g2481 . . Cma13g00761 Cma18g00197 Car13g00613 Car18g00191 Cpe09g00996 . Bhi08g01670 Tan05g1953 Cmetu12g0311 Lac10g0500 Hepe07g2192 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012221 1 1 1 1 1 0 2 0 1 0 0 0 2 1 1 2 1 2 2 0 1 1 1 1 0 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00197 Cma_Chr18 FPKM 2.087301 2.863353 3.773484 2.989926 6.834123 6.729826 6.739007 2.196909 2.106153 1.743869