Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00201 ATGGCAGCTCTTTCCAACAAATATGGCCCTCTAATGCTCCTAAAGCTTGGCCAGAAGCAAGCCCTCGTGGTTTCATCACCAAAAATGGCTAAAGAAGTGATGAAGACCCATGACATCAAATTCTCCAACAGGCCCCAAACTACTGCTGCACACGAATTGCTGTACCAATGTCAAGACATTGGCTTTGCTCAATATGGTGAGTACTGGAGACAAGCCAGAAAAGTGTGCGCTCTTGAGCTTTTTAGTGCCAAAAGAGTGGACTCTTTTCAGTACGTAAGGGATGAAGAAGTTGCTGATCTTTTTCCTTCTCTTTGGTGGATTGATATTATTAGAGGGTTCATTAAGGAGTTGAAAGATTGCTCCAAAACATTGGATACATTTGTTAGTAAAGTGGTTGAAGAACACAAGGCAAAGATAAGAGATGGTGTTCTAACTGATGAATCTAAGAAGGATTTTGTGGATATCATGTTGCAGCTCGAAGAGGACAACATGATTGACTATCATTTCTCTCTTCACAACCTCAAAGGAATGTTACTGCTCATCAAAAGCAAGAAACCCAACTTCCCTCCTTCACCACCAACGCTACCCATCATCGGCAACCTCCACCAATTAGGTGCCCTGCCACACCAATCCATGGCAGCTCTTTCTAACAAATATGGCCCTCTAATGCTCCTAAAGCTTGGCCAGAAGCAAGCCCTCGTGGTTTCATCACCAAAAATGGCTAAAGAAGTGATGAAGACCCATGACATCAAATTCTCCAACAGGCCCCAAACTACTGCCGCATACGAATTGCTGTACCAATGTCAAGACATTGGCTTTACTCAATATGGTGAGTATTGGAGACAAGCCAGGAAAGTGTGCGCTCTTGAGCTTTTTAGTGTCAAAAGAGTGGACTCCTTTCAGTACGTAAAGGATGATGAAGTTGGTGAGCTCATTGACAGGATTCGTAAGGCTTGTATGGGCGGTGAGGCTGTCAATCTAAGCCAGTTGTTTCTTCAAACATCGAACAATATAGTGTCGAGATGTGTTTTGGGAGAGAAATTTGAGGATGAAAATGGGAATAGTAGATTTGGAGACACAGCCAGAAAGCTCCAACGGGATGACATGTTTGACTATCATTTCTCACCGATCAACCTCAAAGCAATCGTACTGGACATGTTTGTTGGAGGATGTGACACAACAGCGACAGTACTAGAGTGGACAATGACAGAGCTGATGAGAAATCCAGCAGCCATGAAGAAAGTCCAAGAGGAAGTAAGGACAATAACAGGAAAGAAACCAAAGATCGAAGCTGAAGATATTCAAAAGATGGAGTACATGCACTGCGTCATAAATGAATCTCTGAGGCTCCACCCGCCAATTCCTCTGCTAGTGCCACGAGAAACAGCAACAGATGTGGAGATCGACGGCTACCATATTCCATCAAAGACAAGAGTTTTTGTGAACGCATGGAAAATCCAAAGGGATCCCGAAAATTGGCACAATCCAAACGAATTCATTCCAGAGAGGTTTATGGATGACAGTTCAGTGGATTACAAAGGCCAAGACTATGAGTTTATTCCATTTGGAAGTGGGAGAAGGAAGTGCCCAGGATTGTCATTTGGGGCTGCTTCATTTGAACATGCATTGGCTAATCTTCTCCCTTGGTTTGATTGGAAGCTTCCCAGTGACTGTGATCTGAGCGTCGAAGAAGAAAATGGGCTCACTGTTCGCAAGAAAACCCCCCTCCTCCTTAATCCAATGCCATGTCTCTAA 1755 43.82 MAALSNKYGPLMLLKLGQKQALVVSSPKMAKEVMKTHDIKFSNRPQTTAAHELLYQCQDIGFAQYGEYWRQARKVCALELFSAKRVDSFQYVRDEEVADLFPSLWWIDIIRGFIKELKDCSKTLDTFVSKVVEEHKAKIRDGVLTDESKKDFVDIMLQLEEDNMIDYHFSLHNLKGMLLLIKSKKPNFPPSPPTLPIIGNLHQLGALPHQSMAALSNKYGPLMLLKLGQKQALVVSSPKMAKEVMKTHDIKFSNRPQTTAAYELLYQCQDIGFTQYGEYWRQARKVCALELFSVKRVDSFQYVKDDEVGELIDRIRKACMGGEAVNLSQLFLQTSNNIVSRCVLGEKFEDENGNSRFGDTARKLQRDDMFDYHFSPINLKAIVLDMFVGGCDTTATVLEWTMTELMRNPAAMKKVQEEVRTITGKKPKIEAEDIQKMEYMHCVINESLRLHPPIPLLVPRETATDVEIDGYHIPSKTRVFVNAWKIQRDPENWHNPNEFIPERFMDDSSVDYKGQDYEFIPFGSGRRKCPGLSFGAASFEHALANLLPWFDWKLPSDCDLSVEEENGLTVRKKTPLLLNPMPCL 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1084997 1088972 - CmaCh18G002010.1 Cma18g00201 313539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00201 584 SUPERFAMILY Cytochrome P450 2 179 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 Pfam Cytochrome P450 373 574 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 Pfam Cytochrome P450 2 100 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 Pfam Cytochrome P450 189 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 Gene3D Cytochrome P450 97 180 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 178 366 - -
Cma18g00201 584 PANTHER CYTOCHROME P450 71B11-RELATED 364 582 - -
Cma18g00201 584 PANTHER CYTOCHROME P450 71B11-RELATED 97 179 - -
Cma18g00201 584 PANTHER CYTOCHROME P450 71B11-RELATED 2 100 - -
Cma18g00201 584 Gene3D Cytochrome P450 364 577 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 SUPERFAMILY Cytochrome P450 189 581 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PRINTS E-class P450 group I signature 482 506 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PRINTS E-class P450 group I signature 29 50 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PRINTS E-class P450 group I signature 519 529 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PRINTS E-class P450 group I signature 5 24 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PRINTS E-class P450 group I signature 441 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PRINTS E-class P450 group I signature 529 552 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PANTHER CYTOCHROME P450 71B11-RELATED 178 366 - -
Cma18g00201 584 Gene3D Cytochrome P450 1 96 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 522 531 IPR017972 GO:0005506|GO:0016705
Cma18g00201 584 Gene3D Cytochrome P450 181 363 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 364 582 - -
Cma18g00201 584 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 2 100 - -
Cma18g00201 584 PRINTS P450 superfamily signature 520 529 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PRINTS P450 superfamily signature 442 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PRINTS P450 superfamily signature 389 406 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00201 584 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 97 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00201 - - K20617 cic:CICLE_v10024390mg 445.662
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00089 Cma18g00201 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00201 Cma-Chr18:1084997 Cma14g01195 Cma-Chr14:9549364 1.34E-07 dispersed
Cma18g00200 Cma-Chr18:1079299 Cma18g00201 Cma-Chr18:1084997 2.23E-34 tandem
Cma18g00201 Cma-Chr18:1084997 Cma18g00743 Cma-Chr18:6688579 1.71E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g854 . . . Bda15g00533 . . . . . Cmo18g00168 Cma10g00089 . . . . . Cpe04g01587 Bhi02g00596 . . . . . . . . . . . . . . . . . Lsi02g00427 Csa01g00906 Chy12g01222 Cme12g01648 . . . . . . . . . Cmo10g00091 . . Cma18g00201 . . . . Bhi08g01673 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00201 Cma_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0