Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00203 ATGGAATCTACTCCTCTCGCCACCTCTGTCCCTCCCACTGCCCTCCCCGACGACCTCTACTGCACTCTCCCGGCCTCCGCCGCCTCCGCGGCCGTTCAGCCTATTCCGACGTCTATATTTAGGGAGCTTCCTGAACCTGACATCCAAATACTCGCATCTGGCGGACTCCGAATCCCTGCGCACTCTGGAATCCTGGCTTCGATTTCGCCGGTTCTCGAGCATGTAATCGATCGGCCGCGGAAGAAACGGAACGCTGAGAAAGTGATTTCGATCCTTGGAGTTCCGTCGGATGCCGTCGTTTCGTTCGTTCGGTTCCTTTACAGTTCTAGATGCGCGACGGAGCATCTAGAGAAGCACGGAATTCATCTGCTGGCTCTGTCGCATGTTTACATGGTGCCGCAATTGAAAGCGATGTGTACGAAAGATATCGCTCAACGGCTTACGATCGAGAGCGTTGTGGACGTTCTGCAACTCGCTAGGCTCTGTAACGCGTCTGATCTTTACCTGAGGTGTATGAAATTCGTGGCTGATCATTTTAAATTCGTTGAGAAAACTGAGGGATGGAGATTCATTCAAGATCATGATCCTTGGCTTGAGCTTGATATTCTCCAGTTCATCGAAGAAACTGAATCGAGGAAACAGAGAAACAGGCGGATAAGAAAAGAGAGGAAGCTATATCTACAGCTACACGAAGCAATGGAGTGTTTAGAACACATATGTTCAGAAGGCTGCACCATAGTAGGACCTTACAACGTGGAGCCGAAGAAGGAGAGAGAACCTTGTGCACATTACTCCACATGTCACGGTCTTCAGCTTCTGATCAAACACTTCGCGACGTGTAAGAAGCGAACCAACGGCCAAGGATGCGGTCGCTGCAAGCGCATGTGGCAGCTCCTCAAGCTCCACTCCTCCATCTGCGACCACTCCGACTGCTGCAAAGTCCCTCTCTGCCGGAAATTCAGGTCGCCGCCCGACGATACAGAGAAGATGAAGGGCAAGGACGACGCACAGTGGAAGATGCTTGTCCGAAAAGTGGTTTCGGCAAAAGCGATGTCGTCCCTCTCATTGACGAGTAAGAAGGTGTCGGATATGGAGGACGGCAAGGCGCTCGCTAATCACTGTGGGATTGGGAGCTTTAGATTACAGACGGTTCGACGGTACAGATGA 1167 51.67 MESTPLATSVPPTALPDDLYCTLPASAASAAVQPIPTSIFRELPEPDIQILASGGLRIPAHSGILASISPVLEHVIDRPRKKRNAEKVISILGVPSDAVVSFVRFLYSSRCATEHLEKHGIHLLALSHVYMVPQLKAMCTKDIAQRLTIESVVDVLQLARLCNASDLYLRCMKFVADHFKFVEKTEGWRFIQDHDPWLELDILQFIEETESRKQRNRRIRKERKLYLQLHEAMECLEHICSEGCTIVGPYNVEPKKEREPCAHYSTCHGLQLLIKHFATCKKRTNGQGCGRCKRMWQLLKLHSSICDHSDCCKVPLCRKFRSPPDDTEKMKGKDDAQWKMLVRKVVSAKAMSSLSLTSKKVSDMEDGKALANHCGIGSFRLQTVRRYR 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1098369 1100438 - CmaCh18G002030.1 Cma18g00203 313541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00203 388 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 37 365 - -
Cma18g00203 388 Gene3D Potassium Channel Kv1.1; Chain A 38 146 IPR011333 -
Cma18g00203 388 SUPERFAMILY POZ domain 47 174 IPR011333 -
Cma18g00203 388 SMART BTB_4 46 147 IPR000210 GO:0005515
Cma18g00203 388 ProSiteProfiles BTB domain profile. 46 115 IPR000210 GO:0005515
Cma18g00203 388 Pfam TAZ zinc finger 230 317 IPR000197 -
Cma18g00203 388 Pfam BTB/POZ domain 46 145 IPR000210 GO:0005515
Cma18g00203 388 SUPERFAMILY TAZ domain 221 321 IPR035898 -
Cma18g00203 388 Gene3D - 147 221 - -
Cma18g00203 388 SMART TAZ_2 223 318 IPR000197 -
Cma18g00203 388 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 37 365 IPR044513 -
Cma18g00203 388 Gene3D TAZ domain 222 348 IPR035898 -
Cma18g00203 388 CDD BACK 148 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00203 - - - csv:101209491 668.692
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00769 Cma18g00203 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00922 Cma-Chr3:6642052 Cma18g00203 Cma-Chr18:1098369 8.52E-87 dispersed
Cma07g00654 Cma-Chr7:2857890 Cma18g00203 Cma-Chr18:1098369 1.25E-81 dispersed
Cma13g01115 Cma-Chr13:8330102 Cma18g00203 Cma-Chr18:1098369 9.36E-140 dispersed
Cma18g00203 Cma-Chr18:1098369 Cma18g00587 Cma-Chr18:4137176 2.78E-147 dispersed
Cma13g00769 Cma-Chr13:6642698 Cma18g00203 Cma-Chr18:1098369 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36745 PF00651 BTB 2.60E-10 CL0033 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00203 Cma_Chr18 FPKM 8.004807 9.295576 307.416809 293.996155 5.886426 6.731633 6.627121 54.336308 54.697578 54.303265