Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00204 ATGGCGCCGCCAACACTCTCTCTCTCTCTACTCTCTCTCTTCCTTCTCTCCTCTCTCTCCACCACCCTCTCCGCCGCTCCGGCCGCCGTACAGAACCCCGAACTCGTTGTTCAAGAAGTACACAGGAGCATAATCAACGCGACGAAGCGAAGGAATTTAGGATATCTTTCATGTGGAACGGGAAATCCGATCGACGATTGCTGGCGGTGCGATTCAAATTGGGAGAAAAATCGCCAGAGATTAGCCGACTGTGGAATCGGATTCGGCAAAAACGCCATCGGCGGCCGTGACGGTAAAATCTACGTCGTCACCGATTCCGGCGACGACGATCCCGTCAACCCAAAACCGGGAACTCTCCGGTACGCCGTAATCCAAGACGAACCCCTTTGGATCATCTTCGCTCGCGATATGGTAATCCGATTAAAAGAGGAACTAATCATGAACTCATTCAAAACCATCGACGGCCGTGGCGCCAGCGTCCACATCGCCGGCGGCCCTTGCATTACAATTCAATACGTAACGAACATCATAATCCATGGCTTGAACATTCACGATTGCAAGCAAGGAGGAAACACAGACGTGAGAGATTCCCCCCGACATTTTGGGTTCCGAACTATCTCCGACGGCGACGGCGTTTCAATCTTCGGCGGCAGCCATGTCTGGGTGGATCACTGCTCGTTGTCGAACTGTAATGATGGGTTGATCGATGCGATTCATGGGTCGACGGCGATCACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGCTTGGACATAGCGATTCGTATACTCAAGATAAGAATATGCAGGTCACCATAGCTTTTAACCACTTCGGTGAAGGGCTTGTTCAAAGAATGCCCAGATGCCGACATGGGTATTTTCACGTGGTGAACAATGACTACACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCGACCATTAACAGTCAAGGCAACAGATTTGTAGCTCCAAATGACAGATTCAGCAAAGAGGTGACAAAGTACGAGGATGCGCCGGAGAGTGAGTGGAAGCATTGGAATTGGAGGTCGGAAGGGGATATGATGGTGAACGGTGCGTTTTTCACGGCTTCCGGCGCCGGAGCGTCGTCGAGCTATGCTAGAGCGTCGAGCTTAGGGGCGAGGCCGTCGTCGCTGGTCGGGACAATTACGACCAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGTTGCTGA 1233 51.82 MAPPTLSLSLLSLFLLSSLSTTLSAAPAAVQNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKHWNWRSEGDMMVNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1108778 1110867 - CmaCh18G002040.1 Cma18g00204 313542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00204 410 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Cma18g00204 410 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Cma18g00204 410 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Cma18g00204 410 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Cma18g00204 410 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Cma18g00204 410 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cma18g00204 410 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
Cma18g00204 410 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Cma18g00204 410 Pfam Pectate lyase 146 327 IPR002022 -
Cma18g00204 410 Gene3D - 61 403 IPR012334 -
Cma18g00204 410 PANTHER PECTATE LYASE 22-RELATED 25 407 - -
Cma18g00204 410 PANTHER PECTATE LYASE 18-RELATED 25 407 IPR045032 GO:0030570
Cma18g00204 410 SUPERFAMILY Pectin lyase-like 36 405 IPR011050 -
Cma18g00204 410 SMART amb_all 136 333 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00770 Cma18g00204 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00116 Cma-Chr17:574066 Cma18g00204 Cma-Chr18:1108778 0 dispersed
Cma18g00204 Cma-Chr18:1108778 Cma19g00136 Cma-Chr19:853549 0 dispersed
Cma12g00046 Cma-Chr12:173505 Cma18g00204 Cma-Chr18:1108778 0 wgd
Cma13g00770 Cma-Chr13:6648875 Cma18g00204 Cma-Chr18:1108778 0 wgd
Cma18g00204 Cma-Chr18:1108778 Cma04g02664 Cma-Chr4:18099102 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00204 K01728 - csv:101209736 778.474