Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00205 ATGGCATCAAATGAAGGATTCCTTACTGAGGAGCAGCGGGAAGTGATGAAAATAGCGAGTCAGAATGTGGATGTTTTGTCATCCTCTCCAAAATCTCCCAAAGGCTCACTACTTCCTGAATATCATATTAAAGCCCCTGCTGGTGGGAAGGTACCGGCCCCCGGAATGGGAGTGAAACATGTGCGTAGACAACACTCTGGGAAGCATATTAGGGTGAAAAAGGATGGGGCTGGTGGTAAGGGCACCTGGGGTAAATTACTCGACACTGATGGTGATTCTCATATTGACAGAAATGATCCTAATTATGACAGTGGCGAGGAACCATACCAACTTATTGGGTCGACTGTATCAGATCCTTTGGATGATTATAAGAAATCTGTTGTTTCCATTATAGAGGAATACTTTAGTACTGGTGATGTGGAATTGGCCGCATCTGATCTTGGATATTTAGGCTCAAGTGATTATCATCCTTACTTTATTAAACGGCTAGTATCAATGGCAATGGACAGACATGATAAGGAGAAGGAAATGGCTTCAGTTCTGCTTTCTGCTTTGTATGCTGATGTCATCAGTCCTGCCCATATAAGGGATGGGTTTTTTATGTTACTTGAATCGGCTGATGATCTTGCTGTGGATATATTAGATGCAGTTGATATCCTCGCTTTGTTCTTAGCTCGTGCTGTGGTTGATGATATACTTCCCCCAGCATTTTTAGCCAGGGCAAAGAAAGCATTGCTGGAATCATCCAAAGGAAGTCAGGCTATCCAAACTGCTGAGAAGAGCTATCTCTCTGCTCCACATCATGCGGAACTTGTGGAGAAAAGATGGGGGGGCAGCACACATTTTACAGTAGAGGAAGTGAAGAAGAAGATTGCTTATCTCTTACGGGAATATGTTGAGAGTGGAGATGCTTCTGAGGCATGCAGATGCATAAGGCAGTTGGGTGTTTCATTCTTCCATCACGAGGTTGTGAAGAGGGCTTTGACTCTTGCCATGGAGATCCGAACAGCAGAACCCCTGATACTGAAGCTTCTGAAGGAAGCTGCTGAGGAAGGTCTGATAAGCTCTAGTCAAATGGTTAAGGGGTTTTCTCGGCTGGCAGAGAGCCTCGATGACCTTGCTCTTGATATTCCATCGGCGAAATCTTTGTTTGAATCCTTGATTCCAAGGGCCATATCTGAGGGATGGCTTGATGCTTCCTTTGTGAAATCTTCAGATGAAGATGTGGATGTTGGATCTAAAGATGAAAAGCTGAGACGCTATAAGGAAGAGGCTGTGACTATAATTCATGAATATTTTCTTTCAGATGACATTCCTGAATTATTACGAAGCCTAGAAGATCTCGGTACACCCGAGTATAATCCAATCTTTTTGAAGAGACTGATTACACTTGCAATGGATAGGAAAAACAGAGAAAAAGAAATGGCTTCGGTGCTCCTTTCAGCTCTTCACATTGAGATATTCTCTACAGAGGATATTGTCAATGGTTTTGTGATGCTGCTGGAGTCTGCAGAAGATACAGCGCTGGACATTTTGGATGCATCAAATGAGCTTGCTCTCTTTCTAGCCAGAGCGGTGATTGACGATGTCTTGGCTCCTCTGAATCTGGAGGATATTGCTAACAGGTTGCCCCCAAATTGCACTGGAAGTGAGACCGTGCGAATGGCTCGGTCATTAATTGCAGCTCGTCATGCTGGTGAAAGGCTTTTGAGATGCTGGGGCGGAGGAACTGGCTGGGCAGTGGAGGATGCAAAGGACAAGATCCAGAAGCTCTTGGAGGAGTACGAAAGTGGAGGGGTCGTGAGTGAAGCTTGCCAGTGCATCCGCGATCTGGGAATGCCTTTCTTCAACCACGAGGTTGTGAAGAAGGCATTGGTCATGGCAATGGAGAAGAAGAATGACAGGATTCTAGATCTGCTGCAGGAATGCTTCAATGTTGGCCTGATCACCATCAACCAGATGACTAAAGGCTTCTCTAGGATCAAAGATAGTCTCGACGATCTGGCACTCGACATTCCAAATGCAGGCAAGAAGTTTACTCTCTACGTGGAGCACGCCCAGAAGAAAGGATGGCTGTTACCATCGTTCGGATCAGCTGCTGCTGCTGCAGATTCTTCCGTACTCTTGGCTGTAGCTTCCTGA 2142 45.42 MASNEGFLTEEQREVMKIASQNVDVLSSSPKSPKGSLLPEYHIKAPAGGKVPAPGMGVKHVRRQHSGKHIRVKKDGAGGKGTWGKLLDTDGDSHIDRNDPNYDSGEEPYQLIGSTVSDPLDDYKKSVVSIIEEYFSTGDVELAASDLGYLGSSDYHPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAHIRDGFFMLLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAKKALLESSKGSQAIQTAEKSYLSAPHHAELVEKRWGGSTHFTVEEVKKKIAYLLREYVESGDASEACRCIRQLGVSFFHHEVVKRALTLAMEIRTAEPLILKLLKEAAEEGLISSSQMVKGFSRLAESLDDLALDIPSAKSLFESLIPRAISEGWLDASFVKSSDEDVDVGSKDEKLRRYKEEAVTIIHEYFLSDDIPELLRSLEDLGTPEYNPIFLKRLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNLEDIANRLPPNCTGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIQKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRILDLLQECFNVGLITINQMTKGFSRIKDSLDDLALDIPNAGKKFTLYVEHAQKKGWLLPSFGSAAAAADSSVLLAVAS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1120663 1123593 + CmaCh18G002050.1 Cma18g00205 313543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00205 713 Pfam MA3 domain 422 531 IPR003891 -
Cma18g00205 713 Pfam MA3 domain 585 692 IPR003891 -
Cma18g00205 713 Pfam MA3 domain 124 234 IPR003891 -
Cma18g00205 713 Pfam MA3 domain 287 398 IPR003891 -
Cma18g00205 713 MobiDBLite consensus disorder prediction 87 103 - -
Cma18g00205 713 SUPERFAMILY ARM repeat 283 403 IPR016024 -
Cma18g00205 713 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 695 - -
Cma18g00205 713 SUPERFAMILY ARM repeat 418 576 IPR016024 -
Cma18g00205 713 ProSiteProfiles MI domain profile. 420 541 IPR003891 -
Cma18g00205 713 Gene3D - 116 264 - -
Cma18g00205 713 Gene3D - 414 563 - -
Cma18g00205 713 ProSiteProfiles MI domain profile. 583 702 IPR003891 -
Cma18g00205 713 SUPERFAMILY ARM repeat 121 281 IPR016024 -
Cma18g00205 713 MobiDBLite consensus disorder prediction 81 107 - -
Cma18g00205 713 PANTHER PROGRAMMED CELL DEATH 4 1 695 IPR039778 GO:0045892
Cma18g00205 713 ProSiteProfiles MI domain profile. 122 243 IPR003891 -
Cma18g00205 713 SMART ma3_7 584 693 IPR003891 -
Cma18g00205 713 SMART ma3_7 421 532 IPR003891 -
Cma18g00205 713 SMART ma3_7 123 234 IPR003891 -
Cma18g00205 713 SMART ma3_7 287 398 IPR003891 -
Cma18g00205 713 Gene3D - 272 406 - -
Cma18g00205 713 Gene3D - 571 699 - -
Cma18g00205 713 ProSiteProfiles MI domain profile. 286 407 IPR003891 -
Cma18g00205 713 SUPERFAMILY ARM repeat 580 696 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00205 - - - cmos:111456871 1325.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00774 Cma18g00205 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00774 Cma-Chr13:6667950 Cma18g00205 Cma-Chr18:1120663 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g883 Blo04g00711 Blo16g00247 . . . . Bma06g00241 . Cmo13g00804 Cmo18g00181 . . . . . Cpe20g00337 . . . . . . . . . . . . . . . Cone2ag0946 Cone16ag0054 Cone13ag0195 Cone19ag0188 Lsi02g00460 Csa01g00918 . Cme12g01630 . . Bda11g01627 Bda14g00784 . Bpe15g00662 . . Sed08g2468 . . Cma13g00774 Cma18g00205 Car13g00620 Car18g00200 Cpe09g00991 . Bhi08g01687 Tan05g2890 Cmetu12g0918 Lac10g0533 Hepe07g2167 . . Cla03g00317 Cam03g0335 . . Clacu03g0336 Cmu03g0942 Cre03g0636 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003831 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00205 Cma_Chr18 FPKM 50.171806 60.867889 91.011574 94.575615 57.76688 58.21048 55.353466 130.624146 123.449837 124.835495