Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00207 ATGGCAGCTTCCGCCATGGCGGCCGAGCCGACTCCAGAGGTACTTTCTTGGCTAAAAACCCTACCTCTCGCTCCTGAATATCACCCTACTTTGGCTGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTTCTTCCTTCGCCGAAGAAAGCTGTAATTCTCAATTTCAATAAGTCGCTTGCAGCTCGTGCGCCATGTTCTGACTCGATTAACACCAAGTCTCCGCCTACATTCACTACTCGCCAACAGCAGATCGGGTTTTGCCCGCGAAAAACACGCCCGGTTCAAAAACCAGTGTGGCAGAGCGGCGAGTACTACACATTTCAGCAATTTGAGGCTAAGGCGAAGGCCTTTGAGAAGAGTTATTTGAAGAAATGTACGAAGAAAGGAGGGCTTTCGCCTTTGGAGCTCGAGACGCTCTACTGGAGGGCTACTTTGGATAAGCCCTTTTCGGTGGAATATGCGAATGATATGCCTGGCTCTGCGTTTGTACCTGTGAGTACAAAGATGTTTAGGGAGGCAGGGGATGGCACAACGCTTGGTGAGACGGCGTGGAACATGAGGGCAGTGTCTAGGGCCAAAGGGTCTCTGTTGAAGTTTATGAAGGAAGAGATTCCAGGCGTTACTTCACCAATGGTGTATGTTGCTATGCTGTTTAGCTGGTTTGCTTGGCATGTAGAAGACCATGATTTGCATAGCTTAAATTATCTGCATATGGGGGCGGGGAAAACATGGTATGGCGTGCCGAGAGACGCTGCTGTGGCGTTTGAGGAGGTTGTTCGGGTTCAGGGATACGGAGGAGAAATCAATCCCCTTGTTACTTTTGCCATTCTTGGTGAGAAGACGACCGTGATGTCACCAGAAGTTCTTGTTAGCTCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCTGGTGAGTTTGTTGTCACTTTTCCTCGGGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGCGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGACGCTGCAATTCGTAGAGCTTCAATCAATTATCCTCCAATGGTATCTCACTTTCAGTTGCTATACGATCTTGCTCTAAGTTCCAGAGCACCTCTGTGCACTGGTTCTGAACCGAGAAGCTCACGACTAAAAGATAAAAGAAGAAGTGAAGGCGAAACAGTTATAAAGGAGTTATTTGTACAGAATATTTTCGAGAATAACAGCCTGCTGGACGTTCTCGGAAGTGGAGTTTCTGTTGTACTTCTTCCTCAAGGTTCTTCAGATTCTATCTATTCAAGACTGCGTGTAGGATCCCATATGAGAGGCAAACTTAGATTTCCTGCTGGTTTTTGCAATTCTAAGGAAGAAGCCGAATCCCCTCAAAGTTTTGATTATGATAATCTCACGCTAGAAAACAGCCAGGGAATGAATCGAGTTAAAGGTCTCTATTCAGTCAACGGACTTTATTCTACTCTATCTGAGAGAAGCACAGGTAATTTATGTGCGTCAAGTTCAAGGATTTTGAATGCCACCAACGAACGAGGTGGTAGCATTCACTGCGATGGATTATCGGACCAAAGACTGTTTTCTTGTGTCACGTGTGGCATTTTAAGCTTTGCCTGTGTAGCCATCGTTCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTCGTTGGTTCTGGGATGACCGGTGAAGGGATTGCTCTTAGAGATGGGCATGGTGTTGCTTCTAATAGTGGAAAAAGAGAAAGGTGCGTCGCTGATGGTTTGTACGATGTCCCAGTCCAGGCCGTCAATCGCCAGCTTCCAGTAGCGGATCAAAGTTACAAAGCTAATTTTACTGCTGAAAAACGAAACGAGACTTCTGCCCTTGGCATGCTTGCATTGACTTATGGACATTCATCTGATTCTGAGGAGGATAATGCTGAAGCCGATGCTGCTTTACATGCCAATGATTCTAAACCGACAATTTGTTCTTCAGTAGACCAATATCAGTTTGAAAATTCTGGTCTTACTTCTAGTGAATATTGTAAAAACAGTGCAACTTCCAATCATGATCCCTTGTCAGCTAACTCTACAGATCAAATGCAGTTTCAAGTCAATGACTTTGAAGAATTTGGAAGAGCTAGATTTGATTCCAAAGACTCGTTCAATTGTTCTTCGGAGTTTGAAAGCGATGGCATAGGTTCAACTAAGAAAAATGACTTGTCAACTAGATATCAAGATTCACATGTGAATGGAAAACCTTCCTTAGATACTGATACTGAAAAACCAATGTTTGAGCAGTCCACTGAACCAGTGGAGATCGAGAACATGCCTTTCGCTCCAGATATCGACGAAGACTCTTCTAGGTTGCATGTATTCTGTCTAGAACATGCAAAAGAAGTGGAACAACAACTTCGCCCTATTGGAGGCGTGCATATTCTTTTACTTTGTCATCCAGACTATCCAAAGATGGAAGCCGAAGCGAAATTGATGGCACAAGAATTAAGTATCGACCATCTGTGGACTGATACGACGTTCAGAGATGCCACCCAAGATGAAGAAAAGAGAATTCAGTTATCTTTAGATAGCGAGGAAGCGATTCCGGGTAATGGAGATTGGTCTGTAAAGTTGGGAATTAATCTCTTTTATAGTGCCAACCTTAGCCATTCTCCTCTTTATAGTAAGCAGATGCCGTACAACTCTGTTATTTATAATGCATTTGGGCGCAGTACTTCGGCTAACCCTTCGGGTAAGCCGAAAGTCTATCAAAGGAGGAGCGGCAAGCTGAAAAGAGTAGTTGTAGGGAAATGGTGTGGGAAAGTCTGGATGTCGAATCAAATTCATCCTTTGCTAGCAAAGAGAGATCCTCAAGAAGAAGATGTCGACGGCTTTCCTTCTTGGACAATATCGGATGAGAAGATCGAATGGAAATCGGACAATATCCAGAAAAGTGAGACTGTTAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGTGGGGCAGCGACTAAGAAAGCCGAACCTATAGAGTCGGAGGATATTGTTTCAGATAACTCGGGTGAAGATTGTATTCGTCAGCATCATAGGATTCTACAACACAAGCGGTCTAAAATTGTTGCGAGTAAAGATGCCATGTCGGATGATTCTGTGGAGGTTTTTTCTTATAAAAAACATGGAAGAGTTCCTGTCAATGAGGAAGCTTATTGTGAGACAGACGACCCTGGTTTAGACGAGGGTCCAGACGAATCGCTAGGAGATCGTCATACTAAGCTGCACAGAGGGTTCTATGGATTCAAGCTGCCCAAATGGGGCGAGATAGAACCTGCAGTTTCTGATGATTCCTTAGAGCGCGATTCTTCTCAGTTTCGTGGTAAAACGAGTAAAAGCAAGATAGATAAATATGTTGAGAGACAAGATGCACTTTCGGATGAGTGTTTGGAGAGTCCTCTTAAGCAATATAGAAGGATTCCGAAAAGCAAGCAAGCCAAAGTTGTTAAAAAGAATGCCATTTCGCATGATATACGGGACGATAGTTTTCTTTGGCATCGTCAAGGGACTTCTAGAAGCAAGATGGCCACGATCGACAGTGAAGATGCAGTTTCGGAGGATTCCTTCGAAAATAGTTCTCATCAGCATATGAGTACGCCTCGAAGAAAATCGGCCAAACGTACTGCAAGGGAAAATGTATTTTCAGATGATCCAGATGAAGATGATACCTCTCTTCTGCACCATAGGAAAAATGTAAGAAATGTGCAATCCAAGTACTTCGAGAGAGAAAATACACCAGACGACCAACTCGATGATAGTGCTAATCAGTGCAGGACGAGGGTACTTCGAAGTAAGCCTGTTAAGAAAGAGACCATTTCTCAAATGAAACAAGAGATTCTTCGACCTGCAAAGCGGGGAGCCTCTCGAACTTTGAAAGAAGAATTCTCTCAACCTCTAAAACGTGGAGGCCGCCATACCTTAAAACTAGAGACCCCTCAGCCAACAAAACAACTCGCCCCAAATCGACGTGGTAAGCAAGCTAAGAGGAATAGTAAATTGACCGATTTAGAATCAGAGGAAGAGCCACAACCAGGTGGGCCGAGCACACGTCTTAGACAAAGAACCCCAAAGCCTACTAAATTTTCAGAAGTGAAACCGAATGATAAAAAACCAGTTGGTAAGAAAAAGCTGAAGAATGCTTCATCTTTGAAGACTCCAGCAGGCCATAGAGACTCAAAAGCAAGGGATGAGGAATCAGAGTATCTTTGTGATATTGAGGGCTGCAATATGAGTTTCGGTTCAAAACAAGAACTCGCCTTGCACAAACGAAACATTTGTCCTGTCAAAGGGTGTGGAAAGAAATTCTTCTCACACAAGTACCTCGTGCAGCATCGCCGAGTACACATGGACGATCGTCCCCTCAAATGTCCATGGAGGGGCTGCAAGATGACATTCAAATGGGCATGGGCACGAACAGAACATATTCGTGTTCATACAGGTGACCGACCTTATGTTTGTGCTGAACAAGGATGCGGTCAGACATTCAGATTCGTGTCGGATTTCAGTCGTCACAAGCGGAAGACTGGACATTCAACAAAGAAAGGTAGAGGTTAG 4674 44.09 MAASAMAAEPTPEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVLPSPKKAVILNFNKSLAARAPCSDSINTKSPPTFTTRQQQIGFCPRKTRPVQKPVWQSGEYYTFQQFEAKAKAFEKSYLKKCTKKGGLSPLELETLYWRATLDKPFSVEYANDMPGSAFVPVSTKMFREAGDGTTLGETAWNMRAVSRAKGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAILGEKTTVMSPEVLVSSGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCAEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALSSRAPLCTGSEPRSSRLKDKRRSEGETVIKELFVQNIFENNSLLDVLGSGVSVVLLPQGSSDSIYSRLRVGSHMRGKLRFPAGFCNSKEEAESPQSFDYDNLTLENSQGMNRVKGLYSVNGLYSTLSERSTGNLCASSSRILNATNERGGSIHCDGLSDQRLFSCVTCGILSFACVAIVQPREQAARYLMSADCSFFNDWVVGSGMTGEGIALRDGHGVASNSGKRERCVADGLYDVPVQAVNRQLPVADQSYKANFTAEKRNETSALGMLALTYGHSSDSEEDNAEADAALHANDSKPTICSSVDQYQFENSGLTSSEYCKNSATSNHDPLSANSTDQMQFQVNDFEEFGRARFDSKDSFNCSSEFESDGIGSTKKNDLSTRYQDSHVNGKPSLDTDTEKPMFEQSTEPVEIENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVHILLLCHPDYPKMEAEAKLMAQELSIDHLWTDTTFRDATQDEEKRIQLSLDSEEAIPGNGDWSVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANPSGKPKVYQRRSGKLKRVVVGKWCGKVWMSNQIHPLLAKRDPQEEDVDGFPSWTISDEKIEWKSDNIQKSETVNRKSAGKRKMTYGSGAATKKAEPIESEDIVSDNSGEDCIRQHHRILQHKRSKIVASKDAMSDDSVEVFSYKKHGRVPVNEEAYCETDDPGLDEGPDESLGDRHTKLHRGFYGFKLPKWGEIEPAVSDDSLERDSSQFRGKTSKSKIDKYVERQDALSDECLESPLKQYRRIPKSKQAKVVKKNAISHDIRDDSFLWHRQGTSRSKMATIDSEDAVSEDSFENSSHQHMSTPRRKSAKRTARENVFSDDPDEDDTSLLHHRKNVRNVQSKYFERENTPDDQLDDSANQCRTRVLRSKPVKKETISQMKQEILRPAKRGASRTLKEEFSQPLKRGGRHTLKLETPQPTKQLAPNRRGKQAKRNSKLTDLESEEEPQPGGPSTRLRQRTPKPTKFSEVKPNDKKPVGKKKLKNASSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELALHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWRGCKMTFKWAWARTEHIRVHTGDRPYVCAEQGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1129465 1136458 + CmaCh18G002070.1 Cma18g00207 313545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00207 1557 SUPERFAMILY beta-beta-alpha zinc fingers 1504 1548 IPR036236 -
Cma18g00207 1557 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Cma18g00207 1557 MobiDBLite consensus disorder prediction 1322 1347 - -
Cma18g00207 1557 ProSiteProfiles JmjC domain profile. 195 364 IPR003347 -
Cma18g00207 1557 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 1547 - -
Cma18g00207 1557 SUPERFAMILY Clavaminate synthase-like 209 376 - -
Cma18g00207 1557 Pfam JmjC domain, hydroxylase 228 346 IPR003347 -
Cma18g00207 1557 MobiDBLite consensus disorder prediction 1214 1436 - -
Cma18g00207 1557 MobiDBLite consensus disorder prediction 749 775 - -
Cma18g00207 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1524 1555 IPR013087 -
Cma18g00207 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1496 1518 IPR013087 -
Cma18g00207 1557 Pfam jmjN domain 25 58 IPR003349 -
Cma18g00207 1557 MobiDBLite consensus disorder prediction 1010 1029 - -
Cma18g00207 1557 MobiDBLite consensus disorder prediction 1396 1415 - -
Cma18g00207 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1466 1488 IPR013087 -
Cma18g00207 1557 Gene3D Cupin 17 368 - -
Cma18g00207 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1464 1493 IPR013087 -
Cma18g00207 1557 Gene3D Classic Zinc Finger 1462 1548 - -
Cma18g00207 1557 ProSiteProfiles Zinc finger C2H2 type domain profile. 1494 1523 IPR013087 -
Cma18g00207 1557 SUPERFAMILY beta-beta-alpha zinc fingers 1464 1501 IPR036236 -
Cma18g00207 1557 MobiDBLite consensus disorder prediction 1244 1289 - -
Cma18g00207 1557 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 2 1547 - -
Cma18g00207 1557 SMART c2h2final6 1464 1488 IPR013087 -
Cma18g00207 1557 SMART c2h2final6 1524 1550 IPR013087 -
Cma18g00207 1557 SMART c2h2final6 1441 1463 IPR013087 -
Cma18g00207 1557 SMART c2h2final6 1494 1518 IPR013087 -
Cma18g00207 1557 SMART cupin_9 195 364 IPR003347 -
Cma18g00207 1557 SMART JmjN_1 23 64 IPR003349 -
Cma18g00207 1557 MobiDBLite consensus disorder prediction 749 787 - -
Cma18g00207 1557 ProSitePatterns Zinc finger C2H2 type domain signature. 1526 1550 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00207 - - - mcha:111008693 2556.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02566 Cma-Chr4:17612126 Cma18g00207 Cma-Chr18:1129465 3.17E-10 dispersed
Cma06g00632 Cma-Chr6:3109056 Cma18g00207 Cma-Chr18:1129465 3.17E-77 dispersed
Cma16g01181 Cma-Chr16:9041681 Cma18g00207 Cma-Chr18:1129465 2.87E-77 dispersed
Cma18g00207 Cma-Chr18:1129465 Cma19g00217 Cma-Chr19:1475158 3.51E-73 dispersed
Cma13g00777 Cma-Chr13:6687078 Cma18g00207 Cma-Chr18:1129465 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36746 PF02373 JmjC 1.40E-36 CL0029 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00207 Cma_Chr18 FPKM 6.18423 6.438572 6.634512 6.309495 13.717389 12.430478 13.22412 7.515923 6.221225 6.610645