Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00208 ATGGAACCTTCTGAAGCTGTTTCCGTCCCTATTCACTGTGAATCGCTGCCTTCTGGGTCTCAATCTCTACAGTTTCATGGCTCTGTTCATGATCCTGCACTATTTGATGCATCGCATGTGGCCGCTGATGATCGCATCCATGCAGAGCTTCAGAAATTGGATTTGAAGGATGAGAAAGAGGCGGCGGTGAAGGATTCTGACGGCGGCGGAGAATGGGAAGTTGAGAAGAATCCTGTTGAAGGTGAAGGAAATTTGGAGGAGGAGGAGGAGGAGGTGGTGGTGGATGCAGGCGACGGCGGTGAGGTGGAGAAGGAAGGGGAAATGAGGGGTGGAAACAACCATTACCCTGTACGGTCAGAGGCTGAGGATTGTGCCTTTTACCTTAGGACTGGCACTTGCAAGTTTGGATCATTGTGTAAATTCAATCATCCACTGCGAAAGAGACATCAGGTTGTTTCTGAGAAATTGAAGAATGAGAACGATTCGGCCGAGCAGACGAGCAAGACCGAATGCAAGTATTACTCAAGGACCGGGGGTTGTAAATTCGGAACAGCCTGTAGATATAACCACACGAGACCTAGAGCATTGCCAAACCCAATTCTCGAGCTTAACTTCCTTGGTTTGCCAATCCGACTAAACGAAAAAGAATGTCCCTATTACATGCGCACGGGATGCTGCAAATATGGAGCGAATTGCAAGTTTAATCATCCCGATCCTACTACTGTTGCTGTACCGGAATCGCTGTCGGGATATAATAATGGAGTGTTGCTACAAGGTGGTGCATCACAATCACAGATCACATCCTGGACTTCACCAAGAGTGCTGAATGAAACACCAACATTTGTACCTGCTATGATTTCACCTTCTCAAGATTCAAAATGGAACGCATACCAGGCTCCCATGTATCCATCAGAAATCAGCATGCTTCCACCCCTAACGTACGCCGTGAACAATATAGCATCTGAGACGGATCTTTATACTTCTCATCAGCAAGTAGAAGAATATCCCGAACGACCTGGTCAACCCGAATGCAGCTACTTTCTAAAGACTGGGGATTGTAAATTTAAATCTCTTTGCATATATCACCATCCGAAAAATTGGAACCTGAAGTTACCGACCTGCACGCTCAATGACAAAGGCCTGCCTTTGAGACCTGATCAGAATGTATGCACGTATTACAGTCGCTACGGCATCTGTAAGTTCGGGCCGTCGTGCAAGTTCGACCATCCTATTCTTCCAGCTTCTTCAACGAGCGAGCTTAAACAGCAGCCTCACTACAGCAACTTTAATGCTGCAGAAGGGGCTGAAATGGGCGGAGGGAGTGGAAATGGCGTCACAGTTGAGCAGTCTGCATAA 1356 47.2 MEPSEAVSVPIHCESLPSGSQSLQFHGSVHDPALFDASHVAADDRIHAELQKLDLKDEKEAAVKDSDGGGEWEVEKNPVEGEGNLEEEEEEVVVDAGDGGEVEKEGEMRGGNNHYPVRSEAEDCAFYLRTGTCKFGSLCKFNHPLRKRHQVVSEKLKNENDSAEQTSKTECKYYSRTGGCKFGTACRYNHTRPRALPNPILELNFLGLPIRLNEKECPYYMRTGCCKYGANCKFNHPDPTTVAVPESLSGYNNGVLLQGGASQSQITSWTSPRVLNETPTFVPAMISPSQDSKWNAYQAPMYPSEISMLPPLTYAVNNIASETDLYTSHQQVEEYPERPGQPECSYFLKTGDCKFKSLCIYHHPKNWNLKLPTCTLNDKGLPLRPDQNVCTYYSRYGICKFGPSCKFDHPILPASSTSELKQQPHYSNFNAAEGAEMGGGSGNGVTVEQSA 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1138585 1142149 + CmaCh18G002080.1 Cma18g00208 313546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00208 451 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Cma18g00208 451 SMART c3hfinal6 213 238 IPR000571 GO:0046872
Cma18g00208 451 SMART c3hfinal6 338 365 IPR000571 GO:0046872
Cma18g00208 451 SMART c3hfinal6 166 192 IPR000571 GO:0046872
Cma18g00208 451 SMART c3hfinal6 118 145 IPR000571 GO:0046872
Cma18g00208 451 MobiDBLite consensus disorder prediction 97 111 - -
Cma18g00208 451 Pfam RNA-binding, Nab2-type zinc finger 344 364 - -
Cma18g00208 451 Coils Coil 146 166 - -
Cma18g00208 451 SUPERFAMILY CCCH zinc finger 118 148 IPR036855 GO:0046872
Cma18g00208 451 Gene3D - 384 436 - -
Cma18g00208 451 Gene3D - 115 196 - -
Cma18g00208 451 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
Cma18g00208 451 SUPERFAMILY CCCH zinc finger 168 193 IPR036855 GO:0046872
Cma18g00208 451 MobiDBLite consensus disorder prediction 58 81 - -
Cma18g00208 451 Gene3D - 296 372 - -
Cma18g00208 451 Gene3D - 201 252 - -
Cma18g00208 451 PANTHER PROTEIN PHOSPHATASE RELATED 75 450 - -
Cma18g00208 451 SUPERFAMILY CCCH zinc finger 210 239 IPR036855 GO:0046872
Cma18g00208 451 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 75 450 - -
Cma18g00208 451 SUPERFAMILY CCCH zinc finger 382 410 IPR036855 GO:0046872
Cma18g00208 451 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 387 410 IPR000571 GO:0046872
Cma18g00208 451 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 144 IPR000571 GO:0046872
Cma18g00208 451 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 169 190 IPR000571 GO:0046872
Cma18g00208 451 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 215 237 IPR000571 GO:0046872
Cma18g00208 451 MobiDBLite consensus disorder prediction 431 451 - -
Cma18g00208 451 ProSiteProfiles Zinc finger C3H1-type profile. 165 193 IPR000571 GO:0046872
Cma18g00208 451 ProSiteProfiles Zinc finger C3H1-type profile. 118 146 IPR000571 GO:0046872
Cma18g00208 451 MobiDBLite consensus disorder prediction 58 114 - -
Cma18g00208 451 ProSiteProfiles Zinc finger C3H1-type profile. 338 366 IPR000571 GO:0046872
Cma18g00208 451 MobiDBLite consensus disorder prediction 82 96 - -
Cma18g00208 451 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00208 - - - cmo:103484086 719.924
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00777 Cma18g00208 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00208 Cma-Chr18:1138585 Cma20g00237 Cma-Chr20:1145042 2.04E-11 dispersed
Cma18g00208 Cma-Chr18:1138585 Cma13g00777 Cma-Chr13:6687078 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36747 PF00642 zf-CCCH 5.30E-09 CL0537 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00208 Cma_Chr18 FPKM 25.096056 26.663134 23.56583 22.94705 20.406033 22.887657 20.098873 15.537798 15.872287 14.280997