Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00215 ATGGGTAAACGAAAGCGTCCACAACCGGTGAACTTCATTGACCTCGATCAGCCGACCACAGGGCATGGCAACAGGAAAAAATTAAAAGAATCTGAGAATATCGAAACTGTACAGCTTGTACCCCCCTCGACATCAGACACTAGTCCTGTTCGTCGTTGCAAGCAATCAACAGCAGAAGTTGAAACCAGTGGTGCAAGTCCTAGTCAAAAAAGGAAGCTTGACTCTAGAGCTTTTGAATATTGTTTTCAGAATTTATGGAGGAGCTCTCCAGAAGAGAAGAAGATCCAGTTTACATACCTTGACTGTTTATGGTTTAGCTTGTACTTGAAAGCAGCACACAGAAGAAAGGTCCTGAAATGGATTAAGAACAAACAAATATTTTCAAAGAAATATGTCTTTGTTCCTATTGTTTGCTGGAGCCACTGGAGCCTATTGATATTTTGCCACTTTGATGAGAAGCCGGAGTCAAAAACTAGAAAACCATGCATGTTATTGCTTGATTCACTTCAGGAGGCAAATCCAAGACGGCTTGAACCAGAGATTAGAAAATTTGTTATGGACATTTTCAAAGATGATGGCAGGTGCAAAAACTTGAAGGTTATTGGCGATATTCCTCTCATGGTGCCAAAGGTGCCACAACAGAAGAATGGTGAAGAATGTGGCAAATTTGTTCTGTACTTCATTCATTTGTTTATGAAAGCTGCTCCAGAAAAATTTAGCATCAAAGACTACCCTTACTTCATGAAAGAGAATTGGTTTACAGAAGAAGGTGTGTGCCAATTCTTCAAGACATTCGGCCATTTTGAAGATGATATCTGTCTATAA 825 39.88 MGKRKRPQPVNFIDLDQPTTGHGNRKKLKESENIETVQLVPPSTSDTSPVRRCKQSTAEVETSGASPSQKRKLDSRAFEYCFQNLWRSSPEEKKIQFTYLDCLWFSLYLKAAHRRKVLKWIKNKQIFSKKYVFVPIVCWSHWSLLIFCHFDEKPESKTRKPCMLLLDSLQEANPRRLEPEIRKFVMDIFKDDGRCKNLKVIGDIPLMVPKVPQQKNGEECGKFVLYFIHLFMKAAPEKFSIKDYPYFMKENWFTEEGVCQFFKTFGHFEDDICL 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1160471 1164024 - CmaCh18G002150.1 Cma18g00215 313553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00215 274 Pfam Ulp1 protease family, C-terminal catalytic domain 113 250 IPR003653 GO:0006508|GO:0008234
Cma18g00215 274 ProSiteProfiles Ubiquitin-like protease family profile. 40 231 IPR003653 GO:0006508|GO:0008234
Cma18g00215 274 PANTHER CYSTEINE PROTEINASES SUPERFAMILY PROTEIN 27 266 - -
Cma18g00215 274 MobiDBLite consensus disorder prediction 36 70 - -
Cma18g00215 274 MobiDBLite consensus disorder prediction 1 70 - -
Cma18g00215 274 SUPERFAMILY Cysteine proteinases 70 247 IPR038765 -
Cma18g00215 274 Gene3D Adenoviral Proteinase; Chain A 30 254 - -
Cma18g00215 274 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 27 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00215 - - - csv:101212106 464.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00215 Cma-Chr18:1160471 Cma18g00801 Cma-Chr18:7039539 2.21E-15 dispersed
Cma18g00215 Cma-Chr18:1160471 Cma12g00198 Cma-Chr12:922037 2.24E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g911 . . . . . . . . . Cmo18g00191 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0043 . . Lsi02g00474 Csa01g00931 Chy12g01196 Cme12g01619 . . . . . Bpe15g00199 Bma03g01275 . Sed01g1592 . . . Cma18g00215 . Car18g00100 Cpe09g00983 . Bhi08g01707 Tan05g2915 Cmetu12g0042 Lac10g0545 Hepe07g2155 . . Cla03g00330 Cam03g0346 Cec03g0337 Cco03g0351 Clacu03g0347 Cmu03g0953 Cre03g0646 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009589 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00215 Cma_Chr18 FPKM 4.717968 3.51385 5.077456 5.224386 3.167722 2.983898 3.27311 8.162908 8.400946 10.150881