Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00218 ATGGCTAAGATCAAGATCGGAATCAACGGATTCGGAAGAATCGGGAGGTTGGTTGCTAGAGTTGCTTTACAGAGAGACGATGTGGAACTCGTTGCTGTTAACGATCCTTTCATCACGACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCATGGCCGCTGGAAGCACAGTGACGTGAAGGTGAAGGACTCTAAGACCCTTCTTTTTGGTGAGAAGGCTGTCACTGTTTTTGGCGTCAGAAACCCGGAGGAGATCCCATGGGGTGAGACCGGAGCGGAATACATTGTAGAGTCCACTGGTGTTTTCACAGACAAAGAAAAGGCTGCTGCTCATTTGAAGGGTGGTGCAAAGAAGGTTATCATCTCTGCCCCCAGCAAAGATGCCCCCATGTTTGTGGTGGGAGTCAATGAGAAGGAATACAAGCCAGAACTTGACGTTATTTCTAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTGCCAAGGTTATCCATGACAGGTTTGGCATCGTTGAGGGTCTGATGACCACTGTTCACTCAATCACCGCCACACAAAAAACTGTTGATGGGCCATCTAGCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATCCCTAGCAGCACTGGAGCTGCCAAGGCCGTTGGCAAAGTCCTTCCAGCATTGAATGGTAAATTGACCGGAATGTCTTTCCGTGTTCCCACTGTCGATGTCTCTGTCGTTGATCTTACAGTGAGGTTGGAAAAGAAGGCCTCTTATGAGGATATTAAGGCAGCCATCAAGGAAGAGTCTGAGGGAAAATTGAAGGGAATTTTGGGCTACACTGAAGACGATGTCGTGTCCTCCGATTTTGTTGGTGACACCAGGTCAAGCATCTTCGATGCCAAGGCCGGGATTGCATTGAATGACCAGTTTGTGAAGCTCGTCTCATGGTACGACAACGAAGTAGGATACAGTTCTCGTGTCCTTGACTTGATCATCCATGTCGCATCTACCCAATATGGTGTGGATTTCACCCGCTTTATATGTGTGTTTGTAATGGTCTTTATGTCCAAGATCAAGATTGGAATCAACGGATTCGGAAGGATTGGGAGGTTGGTAGCTAGGGTTGCTCTTCAGAGAAATGATGTTGAACTTGTTGCTGTTAATGATCCTTTTATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCATGGCCAGTGGAAGCATCAAGATGTGAAGGTCAAGGATTCTAATACCCTTATCTTTGGTGAGCAGGCTGTTAAAGTCTTTGGCCTCAGGAATCCTGAGGAGATCCCATGGGCTGAGGCCGGAGCTGATTATATTGTAGAGTCCACTGGGGTTTTCACAGACAAAGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCAAAGAAGGTAATCATCTCAGCTCCCAGCAAGGATGCTCCCATGTTTGTTGTTGGAGTCAATGAGAAGGAATACACATCAGATCTTAAGGTTATATCTAATGCTAGCTGCACTACCAACTGTCTTGCTCCTCTTGCAAAGGTCATTAATGATAGATTTGGCATTGTTGAGGGCCTCATGACCACTGTCCACTCTATGACTGGTGGGTCTTCCATCATTGGCAATTATAGTTATAGTCCTTATTGGTTATTATCCACCCAAAAGACTGTTGATGGGCCATCTAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATCCCTAGCAGTACTGGAGCTGCTAAGGCTGTCGGCAAAGTCCTGCCTGCATTGAACGGAAAATTGACTGGAATGGCTTTCCGTGTTCCTACCGTTGATGTCTCGGTCGTTGACCTTACTGTAAGGCTGGAGAAGGCAGCATCCTATGAAGATATTAAGGCAGCCATCAAGGAGGAGTCTGAGGGAAAGTTGAAAGGAATTTTGGGTTACACTGAAGATGAGGTGGTGTCCACTGATTTTGTGGGTGACAACAGGTCGAGTATTTTTGATGCTAAGGCCGGGATTGCACTGAACGAACACTTTGTGAAGCTCGTCACGTGGTACGACAACGAGTTAGGCTACAGTACTCGTGTTATCGACCTGATTTCTCACGTCGCATCTGTCAACTAA 2124 46.7 MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGRWKHSDVKVKDSKTLLFGEKAVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELDVISNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKKASYEDIKAAIKEESEGKLKGILGYTEDDVVSSDFVGDTRSSIFDAKAGIALNDQFVKLVSWYDNEVGYSSRVLDLIIHVASTQYGVDFTRFICVFVMVFMSKIKIGINGFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHQDVKVKDSNTLIFGEQAVKVFGLRNPEEIPWAEAGADYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYTSDLKVISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSMTGGSSIIGNYSYSPYWLLSTQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAASYEDIKAAIKEESEGKLKGILGYTEDEVVSTDFVGDNRSSIFDAKAGIALNEHFVKLVTWYDNELGYSTRVIDLISHVASVN 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1180176 1186341 + CmaCh18G002180.1 Cma18g00218 313556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00218 707 Gene3D Dihydrodipicolinate Reductase; domain 2 506 688 - -
Cma18g00218 707 Gene3D Dihydrodipicolinate Reductase; domain 2 153 318 - -
Cma18g00218 707 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 506 686 - -
Cma18g00218 707 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 512 539 IPR020829 GO:0016620
Cma18g00218 707 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 316 IPR020829 GO:0016620
Cma18g00218 707 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 555 686 IPR020829 GO:0016620
Cma18g00218 707 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 IPR020830 GO:0016620
Cma18g00218 707 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153 316 - -
Cma18g00218 707 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 505 512 IPR020830 GO:0016620
Cma18g00218 707 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 IPR020831 GO:0016620
Cma18g00218 707 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 IPR020831 GO:0016620
Cma18g00218 707 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 IPR020831 GO:0016620
Cma18g00218 707 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 IPR020831 GO:0016620
Cma18g00218 707 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 IPR020831 GO:0016620
Cma18g00218 707 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 107 IPR020828 GO:0051287
Cma18g00218 707 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 357 460 IPR020828 GO:0051287
Cma18g00218 707 SMART gp_dh_n_7 4 154 IPR020828 GO:0051287
Cma18g00218 707 SMART gp_dh_n_7 357 507 IPR020828 GO:0051287
Cma18g00218 707 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 174 IPR036291 -
Cma18g00218 707 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 356 523 IPR036291 -
Cma18g00218 707 Gene3D - 357 701 - -
Cma18g00218 707 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 2 335 IPR020831 GO:0016620
Cma18g00218 707 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 348 704 IPR020831 GO:0016620
Cma18g00218 707 Gene3D - 4 330 - -
Cma18g00218 707 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 328 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cma18g00218 707 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 358 698 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cma18g00218 707 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 335 - -
Cma18g00218 707 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 348 704 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00218 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101213074 635.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00787 Cma18g00218 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00788 Cma-Chr13:6747139 Cma18g00218 Cma-Chr18:1180176 3.31E-75 dispersed
Cma15g00093 Cma-Chr15:432399 Cma18g00218 Cma-Chr18:1180176 0 dispersed
Cma18g00218 Cma-Chr18:1180176 Cma19g01115 Cma-Chr19:9175571 2.75E-164 dispersed
Cma04g02952 Cma-Chr4:19428008 Cma18g00218 Cma-Chr18:1180176 0 transposed
Cma13g00787 Cma-Chr13:6743824 Cma18g00218 Cma-Chr18:1180176 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015008 0 0 0 0 0 1 2 1 1 0 1 1 1 0 0 1 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00218 Cma_Chr18 FPKM 71.32605 72.694351 533.216797 519.341492 404.021881 476.440277 393.457428 225.532257 219.546463 213.128036