Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00222 ATGGCGGATCGAGATCGGAAGCTCAAAGCGGCGGCACATTCTGTTGATCCTCGGAGTGGTTTCTGTCCTCAAACCAAGATTTTCCATAGCCTCCGACCACCGATCTCGCTTCCGCCGATATCTCAGCCTCTCACTGTTGTCGGACACGCACTTTCTATTCTACGATCATCACCTCCTCCGGTGAACACTACCGCTCTTGTTGATTTCGACTCAGGTGACAGTATCTCCTACGGTATTTTCCTCTGCCAAATCCGAAACCTCGCCTTTAATCTTAGAACTGTTTTCTCCCTCTCCAAGGGTCAAGTTGCTTTTATTCTTTCGCCGACTTCTCTCCGAGTTCCTGTGTTGTATTTTGCTCTGTTATCACTCGGTGTTGTTGTCTCTCCGGCTAATCCAATCGGTTCTGAATCGGAGATTGCTCACCAAATTCGACTCTGTAAACCGGACATTGCCTTCGTTACTTCCTCAACGGAGTCCAAGCTTCCGAGGGTTCCAGTTTCCAGTGTCTTGATTGATTCAATGCAGTTTATATCTATGATGAATGAAAGAAATCTATCGAATGGAGTGGATGATGATGCTGTTGACGTCAAAGTCGATCAAAACGACTCGGCGGCAATTCTGTACTCGTCAGGGACTACCGGGCGAGTGAAAGGAGTCTTACTGTCTCACAGGAACCTCATAGCGTCGATCTCTAGTGTTATGACATTAGAGGCGACGGCCGACGAAAGAGAGACGGAGCCGCATCCCGTTTCTCTGTACCTGTTACCTATGTTCCATGTTTTCGGATTCTATATGATGATTCGATCGATTTCAGAAGGCCATACGCTGGTTCTGATGCGAAAGTTCGGTTTCGAGGAAATGTTAAGAGCCGTGGAGAAGTATAGGGTTACATACATACCGGTTTCTCCCCCGCTGGTGGTGGCGATGGTTAAGTCGGAGCTGGTGGCCAAGTACGATCTTAGCTCTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCGTCGATAAATTCCATGTTAAGTTCCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGCGGCGGCGGCAAGGACTTTGGGGCCTGAAGAATGCAGTAATACAAGTTCAGTAGGTCGCTTATCTGAAAGTCTGGAAGCCAAAATAGTGGATCCTGCAACTGGAGAAGCCTTATCTCCTGGTCACAAAGGAGAACTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAGAAGGCAACTGCTGAAACGTTGCATCCGGAGGGATGGCTAAAAACTGGTGACCTTTGCTATTTTGATTCTGATGGATATCTCTATATTGTCGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCAGCTGAACTCGAACATTTACTTCAATCCAATCCTGAGATCGCCGACTCTGCTGTCATACCCTACCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATATTGTTAGAAACCATGGAAGCACTATCACTGAAGCTCAAGTCATAGATTTCATTGCAAAACAGGTTGCACCGTACAAGAAAATCCGGAGGGTGTCTTTTGTGAACACGATCCCAAAATCGCCTGCTGGGAAGATTCTTAGGAGGGAGCTTATCAAACATGCGCTCTCTCGTGGTTCTAGCAAGTTATAA 1689 46.71 MADRDRKLKAAAHSVDPRSGFCPQTKIFHSLRPPISLPPISQPLTVVGHALSILRSSPPPVNTTALVDFDSGDSISYGIFLCQIRNLAFNLRTVFSLSKGQVAFILSPTSLRVPVLYFALLSLGVVVSPANPIGSESEIAHQIRLCKPDIAFVTSSTESKLPRVPVSSVLIDSMQFISMMNERNLSNGVDDDAVDVKVDQNDSAAILYSSGTTGRVKGVLLSHRNLIASISSVMTLEATADERETEPHPVSLYLLPMFHVFGFYMMIRSISEGHTLVLMRKFGFEEMLRAVEKYRVTYIPVSPPLVVAMVKSELVAKYDLSSLQILGCGGAPLGKEVVDKFHVKFPNVEIIQGYGLTESSAAAARTLGPEECSNTSSVGRLSESLEAKIVDPATGEALSPGHKGELWLRGPGIMKGYVGDEKATAETLHPEGWLKTGDLCYFDSDGYLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIADSAVIPYPDEEAGEIPMAYIVRNHGSTITEAQVIDFIAKQVAPYKKIRRVSFVNTIPKSPAGKILRRELIKHALSRGSSKL 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1201248 1206957 - CmaCh18G002220.1 Cma18g00222 313560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00222 562 CDD 4CL 38 550 - -
Cma18g00222 562 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 30 551 - -
Cma18g00222 562 Gene3D - 456 556 IPR045851 -
Cma18g00222 562 Gene3D - 40 455 IPR042099 -
Cma18g00222 562 Pfam AMP-binding enzyme 62 460 IPR000873 -
Cma18g00222 562 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 30 551 - -
Cma18g00222 562 SUPERFAMILY Acetyl-CoA synthetase-like 62 556 - -
Cma18g00222 562 Pfam AMP-binding enzyme C-terminal domain 469 544 IPR025110 -
Cma18g00222 562 ProSitePatterns Putative AMP-binding domain signature. 206 217 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02002 Cma-Chr1:12847571 Cma18g00222 Cma-Chr18:1201248 6.73E-172 dispersed
Cma09g00069 Cma-Chr9:298453 Cma18g00222 Cma-Chr18:1201248 8.51E-151 dispersed
Cma14g00225 Cma-Chr14:991400 Cma18g00222 Cma-Chr18:1201248 8.72E-131 dispersed
Cma18g00222 Cma-Chr18:1201248 Cma19g00204 Cma-Chr19:1351565 3.34E-114 dispersed
Cma20g00058 Cma-Chr20:258462 Cma18g00222 Cma-Chr18:1201248 4.58E-19 transposed
Cma13g00793 Cma-Chr13:6766961 Cma18g00222 Cma-Chr18:1201248 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00222 K01904 - csv:101211791 889.026