Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00259 ATGAAGCTTGTCGCAGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTCGTAATGGAAGACCCTTCTCAGAGGCCTTGGTCGAGCCGAAGCCAGAATTTCGGAATCTCGGAATTGGATCTTGACTACACTGTAATCAGCGTTGGGAAAAAGGGTAACACTTATTTCCTCCGCCGGCCGTACATTCCGGTGGATAAATTCCTCGAAGGCGGCACTCTTCCGACAGCCAAAGAAGCTCAAGCCATAGCTGATGTTTTTTCCTTATTTGTAAGCGAGGAAGTCGATAAAGTAGAGCTTTTATACACAAAATTCGTGTCATTAGTCAAATCCGACCCTGTAATTCATACCCTTCTTCCTCTGTCGCCAAAGGGTGAGATCTGTGATGTGAACGGAATATGTGTGGATGCGGCAGAGGATGAGTTCTTCAGATTAACAACAAAGGAAGGGAAATTGACAGTGGAAAGGGATTCAGTGAGGACAAGCACCACGGATTTCTCACCGAGTTTGGAGTTCGAGCAGGATCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGTCTCTGCAAGAGTCGCTGGCGAGTGAGCTCGCAGCTAGTGCCACGGATAATGCTTCTGAGCTGAAGAGGACTTTGTCGATTGTGTATAATAGACAACGCCAAGATAAGATTACCGGAGAAATTTGGAGATTATTGCTGGTGCTAATGCATTGA 729 46.36 MKLVAAAKVRRAQEAVVMEDPSQRPWSSRSQNFGISELDLDYTVISVGKKGNTYFLRRPYIPVDKFLEGGTLPTAKEAQAIADVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGICVDAAEDEFFRLTTKEGKLTVERDSVRTSTTDFSPSLEFEQDPVQILDALLPLYLNSQILRSLQESLASELAASATDNASELKRTLSIVYNRQRQDKITGEIWRLLLVLMH 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1357052 1357928 + CmaCh18G002590.1 Cma18g00259 313597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00259 242 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 1 234 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cma18g00259 242 PANTHER ATP SYNTHASE GAMMA CHAIN 36 234 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma18g00259 242 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 36 234 - -
Cma18g00259 242 Gene3D ATP synthase, gamma subunit, helix hairpin domain 144 237 - -
Cma18g00259 242 Gene3D - 27 120 - -
Cma18g00259 242 Pfam ATP synthase 41 233 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma18g00259 242 PANTHER ATP SYNTHASE GAMMA CHAIN 1 18 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma18g00259 242 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 18 - -
Cma18g00259 242 CDD F1-ATPase_gamma 1 233 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma18g00259 242 PRINTS ATP synthase gamma subunit signature 94 111 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cma18g00259 242 PRINTS ATP synthase gamma subunit signature 221 242 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00864 Cma-Chr16:5162871 Cma18g00259 Cma-Chr18:1357052 1.28E-71 dispersed
Cma13g00740 Cma-Chr13:6538101 Cma18g00259 Cma-Chr18:1357052 2.32E-130 wgd
Cma18g00259 Cma-Chr18:1357052 Cma03g00537 Cma-Chr3:5065340 3.23E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00259 K02115 - csv:101214408 343.199