Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00259 | ATGAAGCTTGTCGCAGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTCGTAATGGAAGACCCTTCTCAGAGGCCTTGGTCGAGCCGAAGCCAGAATTTCGGAATCTCGGAATTGGATCTTGACTACACTGTAATCAGCGTTGGGAAAAAGGGTAACACTTATTTCCTCCGCCGGCCGTACATTCCGGTGGATAAATTCCTCGAAGGCGGCACTCTTCCGACAGCCAAAGAAGCTCAAGCCATAGCTGATGTTTTTTCCTTATTTGTAAGCGAGGAAGTCGATAAAGTAGAGCTTTTATACACAAAATTCGTGTCATTAGTCAAATCCGACCCTGTAATTCATACCCTTCTTCCTCTGTCGCCAAAGGGTGAGATCTGTGATGTGAACGGAATATGTGTGGATGCGGCAGAGGATGAGTTCTTCAGATTAACAACAAAGGAAGGGAAATTGACAGTGGAAAGGGATTCAGTGAGGACAAGCACCACGGATTTCTCACCGAGTTTGGAGTTCGAGCAGGATCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGTCTCTGCAAGAGTCGCTGGCGAGTGAGCTCGCAGCTAGTGCCACGGATAATGCTTCTGAGCTGAAGAGGACTTTGTCGATTGTGTATAATAGACAACGCCAAGATAAGATTACCGGAGAAATTTGGAGATTATTGCTGGTGCTAATGCATTGA | 729 | 46.36 | MKLVAAAKVRRAQEAVVMEDPSQRPWSSRSQNFGISELDLDYTVISVGKKGNTYFLRRPYIPVDKFLEGGTLPTAKEAQAIADVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDVNGICVDAAEDEFFRLTTKEGKLTVERDSVRTSTTDFSPSLEFEQDPVQILDALLPLYLNSQILRSLQESLASELAASATDNASELKRTLSIVYNRQRQDKITGEIWRLLLVLMH | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 1357052 | 1357928 | + | CmaCh18G002590.1 | Cma18g00259 | 313597 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00259 | 242 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 1 | 234 | IPR035968 | GO:0015986|GO:0045261|GO:0046933 | |
Cma18g00259 | 242 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 36 | 234 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma18g00259 | 242 | PANTHER | ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC | 36 | 234 | - | - | |
Cma18g00259 | 242 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 144 | 237 | - | - | |
Cma18g00259 | 242 | Gene3D | - | 27 | 120 | - | - | |
Cma18g00259 | 242 | Pfam | ATP synthase | 41 | 233 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma18g00259 | 242 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 18 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma18g00259 | 242 | PANTHER | ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC | 1 | 18 | - | - | |
Cma18g00259 | 242 | CDD | F1-ATPase_gamma | 1 | 233 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma18g00259 | 242 | PRINTS | ATP synthase gamma subunit signature | 94 | 111 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 | |
Cma18g00259 | 242 | PRINTS | ATP synthase gamma subunit signature | 221 | 242 | IPR000131 | GO:0015986|GO:0045261|GO:0046933 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00864 | Cma-Chr16:5162871 | Cma18g00259 | Cma-Chr18:1357052 | 1.28E-71 | dispersed | |
Cma13g00740 | Cma-Chr13:6538101 | Cma18g00259 | Cma-Chr18:1357052 | 2.32E-130 | wgd | |
Cma18g00259 | Cma-Chr18:1357052 | Cma03g00537 | Cma-Chr3:5065340 | 3.23E-126 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00259 | K02115 | - | csv:101214408 | 343.199 |