Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00286 ATGACCACTACCTCTTCAAAATCTTTCTACGCCTTGTCGGCTGGGTTTAGGGTAATGGCTCCGACGGAGTTGAAACCGCTTTATTTGCAATTTCTTCTGCTTCTGATGTTGATTTGGGTGTCCAGAATAGGCGCATCGGATACTATGTTCAACGAGTCAGGGCATTCGGTTGTTTCCAGAAATGAAAACCCAAAAGGTCGGTGCCCTCATGGTTGGTTTATTAGCCCAAACAAGACTAAGTGCTACGGTTTCATGTCGGTTCCTAAATCCTGGAATGAATCAGAGAGCCACTGTAATGATTATGGTGGGAACTTAGCAGCACTGATAACATATCAAGAATTTAGCTTTGCACAAAATTTGTGTAATGGAACTCTTTGTGGCTGTTGGGTTGGTGGCAGAGCGTTCAACTCCTCGAATGATTTTGTTTGGAAGTGGTCAGATAATGTTTCAAAATGGAACAATTCCATTTTTCCCAGCACAGCTTTGCAATCTAATTGCAAAAATGTCTCGTGCCGCTTGAATGATTCAGTAGAAACATGTACTTTGATATCTGGTGGATTGGCAACACCATTACTTAAGGATGAGAAATGCAACAGTTCTCACCCTTACATATGCATGATAAATCTAGATGGAAGGTGCCATCGCATGCACTGCCACAAGGATTATCTAGTCATACTAGCTGTTGTGAGTGGGTTGATAGTTTGCACGACGTTAGCTGTGGTGGTTTGGCTTCTTGCCTACAAGAGGAGCAAAAAGCGGAGAAGGTCTCGAAAGCCATCGAATAATGCAGCTTCTGCATTGGTACCACCTTCATGGAAGGTGTTTACCAAAGAAGAGCTAAGATCGATTACTAAAAACTTCAGTGAGGGAAACCGTCTTCTTGGAGACACGAAAACAGGTGGTACATACAGTGGCCTTTTACCTGATGGTTCAAGAGTTGCAATTAAAAGGTTAAAGAAGTCCAGCTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGCAAGAGTTGCTAAACTTCGTCATCCGAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCACGGTGATCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTTACCATGTCCCAAGAGGTGGTCGAAGCTTAGATTGGACCATGCGAATGAAAGTTGCCACGACTCTTGCCCAAGGGATTGCGTTCCTTCACGACAAGGTCAAGCCACACGTGGTTCATCGTGATATCCGTGCTAGTAATGTACTTCTTGATGAAGATTTTGGAGCACATCTGATGGGAGTAGGCTTGTCAAAGTTGGTCGCATATGAAGTGATGCATGAGAGGACTGTGATGGCAGGGGGAACCTATGGTTACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACAACAAAGAGCGATGTCTATAGTTTTGGGGTGCTGTTACTTGAAGTTGTGACGGGTCGAAGGCCTGCACAGGCAGTTGATTCTGTTGGTTGGCAGAGCATTTTCGAATGGGCAACGCCCCTCGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATCACAGCCACATCTACTTTTGAAATTCCGGAGGCTGGTGTTGTTCAGAAGGTGGTGGACCTTGTGTATGCTTGCACACAGCACGTCCCATCCATGCGCCCAAGAATGTCGCATGTTGTTCATCAGTTGCAACAATTGGCACCCTCACCTCTCACTATGAAGTAA 1731 44.71 MTTTSSKSFYALSAGFRVMAPTELKPLYLQFLLLLMLIWVSRIGASDTMFNESGHSVVSRNENPKGRCPHGWFISPNKTKCYGFMSVPKSWNESESHCNDYGGNLAALITYQEFSFAQNLCNGTLCGCWVGGRAFNSSNDFVWKWSDNVSKWNNSIFPSTALQSNCKNVSCRLNDSVETCTLISGGLATPLLKDEKCNSSHPYICMINLDGRCHRMHCHKDYLVILAVVSGLIVCTTLAVVVWLLAYKRSKKRRRSRKPSNNAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYSGLLPDGSRVAIKRLKKSSFQRKKEFYSEIARVAKLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLYHVPRGGRSLDWTMRMKVATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEDFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEVVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTFEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTMK 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1517592 1520902 - CmaCh18G002860.1 Cma18g00286 313624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00286 576 Pfam Protein tyrosine and serine/threonine kinase 294 565 IPR001245 GO:0004672|GO:0006468
Cma18g00286 576 SMART CLECT_2 68 206 IPR001304 -
Cma18g00286 576 SUPERFAMILY C-type lectin-like 58 209 IPR016187 -
Cma18g00286 576 SUPERFAMILY Protein kinase-like (PK-like) 261 565 IPR011009 -
Cma18g00286 576 Pfam Lectin C-type domain 88 206 IPR001304 -
Cma18g00286 576 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00286 576 CDD CLECT 80 205 - -
Cma18g00286 576 ProSitePatterns Tyrosine protein kinases specific active-site signature. 410 422 IPR008266 GO:0004672|GO:0006468
Cma18g00286 576 ProSiteProfiles C-type lectin domain profile. 77 206 IPR001304 -
Cma18g00286 576 SMART tyrkin_6 291 565 IPR020635 GO:0004713|GO:0006468
Cma18g00286 576 Gene3D Transferase(Phosphotransferase) domain 1 364 570 - -
Cma18g00286 576 Gene3D - 48 209 IPR016186 -
Cma18g00286 576 Gene3D Phosphorylase Kinase; domain 1 262 363 - -
Cma18g00286 576 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 569 - -
Cma18g00286 576 PANTHER - 23 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00286 Cma-Chr18:1517592 Cma19g01059 Cma-Chr19:8910273 8.47E-62 dispersed
Cma13g00845 Cma-Chr13:6998117 Cma18g00286 Cma-Chr18:1517592 3.93E-59 transposed
Cma13g00843 Cma-Chr13:6992954 Cma18g00286 Cma-Chr18:1517592 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69276 PF07714 PK_Tyr_Ser-Thr 2.50E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00286 - - csv:101218425 1013.45