Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00288 ATGAAAGCGGTGGTCTTGTTGTCTGTTCTTTTCCTAATTCAGGCAGCCGCCGTGGTGTCGTCGGCCGACAAAGAGTACGATGATGACGGCGAAGAATACACGAGCCTTGAGGTTCCACTGTTGCCGGAGTCTTCAGATTTCGACGACTTTCTTTCGTACGGATTCTACCGGAAAAGTTGCCCCGGCGTCGACCGCATCATTCACCAGAAACTCAAGCAGTGGTACGATGAGGATAAAACTATTGCCGCCAGCATCATCAGACTCCATTTCCACGACTGCGTTGTCAGGGGCTGCGACGCTTCGATTCTTCTGGATTACGAGGGAAGCGAGAGGAGGGCTCCGGCGAGCAAGACGCTGAGAGGGTTCGATGTGATCGACGATATCAAAGCAGAGTTAGAGAAGCAATGCCCCAAAACAGTTTCTTGCGCAGATATTCTAACCGCCGCCGCCAGAGAGGCCACCATTCTCGTCGGCGGCCCATATTGGACGGTGCCTTATGGAAGACGAGATGGAGTGGATTCCATTGGCAGCGAAACTGGACTGGTACCAATGGGTCTTGAAGGCATCACTGATCTCATCGAACGATACCAATCTCTAGGCTTGAATCTCGTGGATTTGGTCGTTCTTTCAGGCGCGCACACCATCGGCAGAGCGACATGCGGGTCGATACAGAGCAGGCTTTACAACTACAGCGGAACGGGCAAACCAGACCCATCAATGAGCACAAGCTACGTCAATTTCTTGAGAAGAAAATGCCGATGGGCGTCGGATTACGTTGACCTTGACGCCACGACGCCGAACAAATTCGACAACGCGTACTACACGAATCTGCCGAAAAAGATGGGTCTTTTGCCGAGTGATTCAGCTCTGTATACTGATCGAAGAACTGCCCCCATCGTCAAGGCTTTGGCGTATCAGCCATCCATTTTCCGCCTCCAATTTGCTGTGTCCATGGCTAAGCTTGGGAATGTTCAAGTTCTTACTGATCTTTTTGAAGGGGAGATTCGAACCAACTGCAGTTGTAGGAATTATTAA 1035 51.01 MKAVVLLSVLFLIQAAAVVSSADKEYDDDGEEYTSLEVPLLPESSDFDDFLSYGFYRKSCPGVDRIIHQKLKQWYDEDKTIAASIIRLHFHDCVVRGCDASILLDYEGSERRAPASKTLRGFDVIDDIKAELEKQCPKTVSCADILTAAAREATILVGGPYWTVPYGRRDGVDSIGSETGLVPMGLEGITDLIERYQSLGLNLVDLVVLSGAHTIGRATCGSIQSRLYNYSGTGKPDPSMSTSYVNFLRRKCRWASDYVDLDATTPNKFDNAYYTNLPKKMGLLPSDSALYTDRRTAPIVKALAYQPSIFRLQFAVSMAKLGNVQVLTDLFEGEIRTNCSCRNY 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1529480 1532102 - CmaCh18G002880.1 Cma18g00288 313626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00288 344 Pfam Peroxidase 68 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 SUPERFAMILY Heme-dependent peroxidases 51 343 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PANTHER PEROXIDASE 25-RELATED 38 341 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 CDD secretory_peroxidase 51 340 IPR033905 GO:0004601|GO:0042744
Cma18g00288 344 Gene3D - 54 343 - -
Cma18g00288 344 PRINTS Haem peroxidase superfamily signature 82 96 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Haem peroxidase superfamily signature 140 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Haem peroxidase superfamily signature 158 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Haem peroxidase superfamily signature 205 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 ProSitePatterns Peroxidases active site signature. 82 93 IPR019794 GO:0004601
Cma18g00288 344 ProSitePatterns Peroxidases proximal heme-ligand signature. 205 215 IPR019793 -
Cma18g00288 344 Gene3D Peroxidase, domain 2 183 321 - -
Cma18g00288 344 ProSiteProfiles Plant heme peroxidase family profile. 50 343 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 60 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 84 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 120 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 139 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 158 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 204 216 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 260 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 276 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PRINTS Plant peroxidase signature 316 329 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00288 344 PANTHER PEROXIDASE 38 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00675 Cma-Chr2:4138381 Cma18g00288 Cma-Chr18:1529480 1.13E-130 dispersed
Cma18g00288 Cma-Chr18:1529480 Cma03g00990 Cma-Chr3:6983239 1.03E-87 dispersed
Cma18g00288 Cma-Chr18:1529480 Cma04g00767 Cma-Chr4:3896086 4.98E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00288 K00430 - csv:101208042 565.459