Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00292 ATGGCTGCTGTCCTTCACGACGGTGCTCCAAACACTCAAAACTCAACGCCTGCCCTCTTCTTCATTATGATTTCCGGAGTTGGGAGCGTCGTTTGGATGGAGAATCGAGAGGATGAAGGCTCTGCTTCCTGGACTAGTAACAACACTCACAACCATCTCAACCACCCTGCTGCTAATTGCTCTGTTTCGGATAACAAGGACCAAATCAGCTCTCTATCTACCTTCAAATCCATGCTTGAGGTTGAAGATGACTGGTGCATTGCTAGTAATGCCCTCCATGACATAAGCTTCTCTCAGAATTTCACTGACCCACCTGACAATTTGTTGCTTCCCCATGGAGATTCCTCCTCTTCTTGTTCCCCTTCTTCCTCTGTGTTCAATAACATTGACCCATCTCAATTGCAGTTCTTCTTACCCCCAACTCGAACTTTGTCTTCACTTTACAAGGTCATTGGTAATAACAACCCTTTAGACCATGGCTTTGATTTCGGGGCAGAGGTTGGGTTTCTTGATGTCCAAGCTTCGAATACTTCAGCTCTGCTCAGCAGTGGAGGTGAGTTACTTACTGGGTTCACTGGTTTAAGCCCAACAAGTCAGATGAACAGTCCTAATATGTGCTTAGGCTCTCAATTGACAACACCTAACCTGCCCCAAATAACTGGAAATTGTTCGGGTTTAGCGGGATTCCAGAGTTTGGATGAGAATTTGGGAAATGCTCTGCTTCTGAATCGGTCTAAGCTTTTGAGACCACTTGAATCCTTTCCCTCAGTGGGAACTCAGCCGACTCTTTTTCAGAAGAGGGCAGCTCTAAGGAAAAGCTTAGCTGATAAGGGAAGCAATTTGGAGGTTTTGAGCCCCGATGGCGGCTGGTATTCTAACAGGATTGAAGGGGGCGTTGGGAAAAATGAAGTGGGTGATGAAAATGCGAAGAGGAAAATGATTTTAGCAGATGAGTTGCAAGATGCTAGCATCGACACAGCCCGTTTCAACTACGATTCTGATGACTTTACTGAGAATAGTGACCCTAAGTTGGATGAGAGTGGTAGAAATGTTGGAAATACTTCTAACGCCAATAGTACGGTGACCGGTGGCGATCAGAAGGGGAAGAAGAAAGGACTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAGCTCAATGATAGGCTCTACATGCTGAGGTCCGTTGTTCCCAAAATCAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTACCTGAAGGAACTACTGCAAAGAATCAATGACCTTCATAATGAATTGGAATTTGCTCCTTCCGGTACAGCGTTGACGCCGAGCACAAGCTTTCACCCCCTGACTCCAACCCCACCGACCCTCTCAAGTCGTATAAAGGAAGAGCTTTGTCCTAGCTCATTTCCCAGCCCTAATAGCCAACCTGCAAGGGTCGAAGTTAGGGTACGAGAAGGTCGGGCAGTAAACATACACATGTTCTGTGGTCGTCGACCTGGTCTCTTGCTCTCCTCAGTAAGGGCATTAGATAATCTTGGATTAGACATCCAGCAAGCCGTGATTAGCTGCTTCAATGGTTTTGCCATGGACATTTTCCGAGCAGAGCAATGCAGCGAAGGCCAGGATGTCCATCCTGAGCAGATAAAAGCAATACTATTGCATTCAGTAGGTTTCAATGGTGCGACATAG 1692 46.63 MAAVLHDGAPNTQNSTPALFFIMISGVGSVVWMENREDEGSASWTSNNTHNHLNHPAANCSVSDNKDQISSLSTFKSMLEVEDDWCIASNALHDISFSQNFTDPPDNLLLPHGDSSSSCSPSSSVFNNIDPSQLQFFLPPTRTLSSLYKVIGNNNPLDHGFDFGAEVGFLDVQASNTSALLSSGGELLTGFTGLSPTSQMNSPNMCLGSQLTTPNLPQITGNCSGLAGFQSLDENLGNALLLNRSKLLRPLESFPSVGTQPTLFQKRAALRKSLADKGSNLEVLSPDGGWYSNRIEGGVGKNEVGDENAKRKMILADELQDASIDTARFNYDSDDFTENSDPKLDESGRNVGNTSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELEFAPSGTALTPSTSFHPLTPTPPTLSSRIKEELCPSSFPSPNSQPARVEVRVREGRAVNIHMFCGRRPGLLLSSVRALDNLGLDIQQAVISCFNGFAMDIFRAEQCSEGQDVHPEQIKAILLHSVGFNGAT 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1555718 1562158 - CmaCh18G002920.1 Cma18g00292 313630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00292 563 MobiDBLite consensus disorder prediction 332 373 - -
Cma18g00292 563 CDD ACT_UUR-ACR-like 492 552 - -
Cma18g00292 563 Coils Coil 411 431 - -
Cma18g00292 563 MobiDBLite consensus disorder prediction 346 365 - -
Cma18g00292 563 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 421 IPR011598 GO:0046983
Cma18g00292 563 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 375 440 IPR036638 GO:0046983
Cma18g00292 563 Pfam Helix-loop-helix DNA-binding domain 379 421 IPR011598 GO:0046983
Cma18g00292 563 SMART finulus 378 427 IPR011598 GO:0046983
Cma18g00292 563 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 113 561 - -
Cma18g00292 563 CDD bHLH_AtAMS_like 375 438 - -
Cma18g00292 563 Gene3D - 366 435 IPR036638 GO:0046983
Cma18g00292 563 PANTHER BHLH TRANSCRIPTIONAL FACTOR 113 561 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01550 Cma-Chr11:10084392 Cma18g00292 Cma-Chr18:1555718 1.23E-152 dispersed
Cma14g00762 Cma-Chr14:3798446 Cma18g00292 Cma-Chr18:1555718 1.65E-148 dispersed
Cma13g00829 Cma-Chr13:6934779 Cma18g00292 Cma-Chr18:1555718 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36750 PF00010 HLH 2.10E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00292 - - cpep:111802474 963.755