Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00295 ATGGATCGGAGGAGACCTGCTAGTCCACTCTCCGCCCGGCAGTGGAGTGGTGGCTCGAGCAGCCCGGGATCATCTTCTCCGGCTCATCCTCACGCTCTATTGGGTTCGAATTCCACCATCAAGCGCGCTCAGAATGTTGCCGCCAAGAAGGCTGCTCAACGTTTGGCTGAGGCTATGGCCAACACGCGGCCGCCCGTGGAGGGCGACGATGAAGATGAAGATGAAGAGGATGATCTCAACTTCCGATTCCGTGCTCCTTTTCCTCCTCCTAGTCACTCGTCTTATCCCAGTGCTGTGAACAGTAACAATTCCAATTCGTTTCATACGATTTCAGGTCCCAGGATTAACAGATCTCCGTCTCCCGCGTTAGATCGTAATTTCGTAGAGCATGTTCCTCAAGTTCGATCCACATCAACTGGTAGATCATCGAGGTCCGTGCGTTCGAGCCAGATCGTTCCACCAAGTAAACCTCCACCCAGAACTCCAGTCTTCATTCCTCCAATTGAACCTCCTTCTAATAGGATTGGAGATAGAAGGTTTACATCAGATATCGGACAGGTCAACTCCAAAGATGCAGGGGATCAGTCCGAAGCTTCTGCACTACGTGATGAGCTTGATATGCTACAAGAAGAGAACGAGAATATACTTGGAAAGCTTCGAGAAGTAGAAGAAAAACGGGAAGAGGCAGAGGCTAGAGCTAGAATGCTAGAGAAACAGGTTGCTACTCTTGGAGAGGGTGTATCTTTGGAAGCCAAATTATTAAGCAGGAAAGAAGCAAAACTCCGTCAAAGAGAGGCTGCACTCAAGGCTGCAATACCAACCAAGGATAGTAGAAACGAAGAAATTGCTGCCCTTCGTTCAGAAATTGAGAACTTAAAAGATGAGTCATCAGCAGCTACAGAACAACTCCGAGAAGCAGAGTCTGAAGCAAAGGCTCTTCGTGTAATGACACAAAGAATGATTTTGACACAAGAGGAGATGGAAGAGGTTGTTTTGAAGAGGTGTTGGCTTGCTCGCTACTGGGGCTTAGCTGTTCAATATGGCATATGTGCGGATATTGCACTCTCAAAACATGAGTATTGGTCTTCTTTAGCTCCTTTGCCATTCGAAGTTGTTACTTCTGCTGGACAAAAGGCTAAGGAGGAGCCTGAAGGTCGAAATGATCAAGATAGGAGTAAGCTCATCCAGGATTTAAATGATCTCTCTGGTGAAGGAAATATTGAGAGTATGCTTTCAGTTGAAATGGGATTGAGAGAACTAGCATCTCTAAAGGTTGAAGATGCAATTGTGCTTGCATTGGCACAACATAGATATCCAAGTTTGATCCATCAATCAGATTCAAAATCACATGCTGATCGGAAGTTTACCGAGGCTTTTGAACTAAGTGAAGCTGAAGCTGAAGATATTCATTTTAAGGAGACATATGGTGTGGATGAGGATGTTGCAGATGAGCGGCTTCAGTTTTGGATCAGTCGTAGTGGACAGCCTCCGACTTCACATGATGCTGTCGATGTCGAACGAGGTCTTGTAGAGCTCAGAAAGCTTGGAATAGAACAACTGCTTTGGGAGGCATCTAGAAAGGAAATCGACCAATCTTCTGCAAGGGAATTAGACACCTAA 1620 46.11 MDRRRPASPLSARQWSGGSSSPGSSSPAHPHALLGSNSTIKRAQNVAAKKAAQRLAEAMANTRPPVEGDDEDEDEEDDLNFRFRAPFPPPSHSSYPSAVNSNNSNSFHTISGPRINRSPSPALDRNFVEHVPQVRSTSTGRSSRSVRSSQIVPPSKPPPRTPVFIPPIEPPSNRIGDRRFTSDIGQVNSKDAGDQSEASALRDELDMLQEENENILGKLREVEEKREEAEARARMLEKQVATLGEGVSLEAKLLSRKEAKLRQREAALKAAIPTKDSRNEEIAALRSEIENLKDESSAATEQLREAESEAKALRVMTQRMILTQEEMEEVVLKRCWLARYWGLAVQYGICADIALSKHEYWSSLAPLPFEVVTSAGQKAKEEPEGRNDQDRSKLIQDLNDLSGEGNIESMLSVEMGLRELASLKVEDAIVLALAQHRYPSLIHQSDSKSHADRKFTEAFELSEAEAEDIHFKETYGVDEDVADERLQFWISRSGQPPTSHDAVDVERGLVELRKLGIEQLLWEASRKEIDQSSARELDT 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1562799 1570390 - CmaCh18G002950.1 Cma18g00295 313633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00295 539 MobiDBLite consensus disorder prediction 152 169 - -
Cma18g00295 539 MobiDBLite consensus disorder prediction 94 116 - -
Cma18g00295 539 MobiDBLite consensus disorder prediction 131 151 - -
Cma18g00295 539 MobiDBLite consensus disorder prediction 12 44 - -
Cma18g00295 539 Coils Coil 275 316 - -
Cma18g00295 539 MobiDBLite consensus disorder prediction 1 198 - -
Cma18g00295 539 Coils Coil 198 246 - -
Cma18g00295 539 PANTHER FAS-BINDING FACTOR-LIKE PROTEIN 1 533 IPR040321 GO:0000911
Cma18g00295 539 PANTHER MYOSIN 1 533 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00295 - - - csv:101221393 808.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00829 Cma18g00295 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01405 Cma-Chr17:9299733 Cma18g00295 Cma-Chr18:1562799 1.90E-162 dispersed
Cma18g00295 Cma-Chr18:1562799 Cma13g00829 Cma-Chr13:6934779 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g34 . Blo16g00288 . . . Bpe13g00185 Bma06g00282 . Cmo13g00860 . . . . . . Cpe20g00289 . . . . . . . . . . . . . . . . . Cone13ag0253 Cone19ag0238 Lsi02g00526 Csa01g00989 Chy12g01145 Cme12g01564 . . . . . Bpe15g00237 Bma03g01224 . Sed08g2408 . . Cma13g00829 Cma18g00295 Car13g00672 Car18g00248 Cpe09g00943 . Bhi08g01536 Tan05g3009 Cmetu12g2124 . Hepe07g2083 . . Cla03g00378 Cam03g0398 Cec03g0384 Cco03g0399 Clacu03g0397 Cmu03g1002 Cre03g0694 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001793 1 3 3 3 2 1 4 2 2 2 0 1 3 2 2 1 2 3 4 2 2 4 2 2 2 2 2 4 3 3 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00295 Cma_Chr18 FPKM 15.464496 15.037067 20.158964 19.804155 8.773951 7.979136 9.098361 46.347595 46.261623 43.967613