Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00297 ATGGCAGCCTTTTCATATCAATACCAACCATTTCTTCTTGACTCAATCCTTCAAGCCAACAATACCCTCAAAATGGGTGGCTTTTTGGATGAACCAAATTTCAATATCAATTGCTTCACTCAATTCTTCCCTCAAGAACAAGAACCAGAACAACCCATTTACTGTTTTCCCGAGCTCTGTAAACAGAGCCCTGAATCTTTCAGTTTGGTCGAGAAATCCGATAGCGGTGAGCCGGTAAGTCAATTGAAGCCCGTTGTGACTTCCGCTTGTAGTAAGAAAAGGAAGGGCCGTGGAAATAACTCCTCCGCCAACTCCGCCCAATCTAAGGAAAGCATTGGGAAGAAGGTGAAAACTAAAAGGGAATTGGATGAAAGGAAAGAAGGAGATGAAAAGGGCAAAACTGGGAAAAAAGAGGAGAAACAAGGTTCAGAAGATGGTGCTCCGACGGGTTATGTTCACGTCAGAGCTAAGAGGGGCCAAGCCACTGATAGCCACAGTCTTGCTGAGAGGGTGAGAAGAGAGAAGATTAGTGAAAGGATGAAGACATTACAACGACTTGTTCCTGGTTGTGACAAGGTAACAGGGAAGGCGCTTATGTTAGATGAAATTATCAACTATGTTCAGTCTCTACAAAATCAAGTTGAGTTTCTCTCCATGAAGCTCACTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGACTTAGACGGCCTCATGATCCAACCCGAGTCATCCTCCTTGAGTAGCATAACGCCACAACTACCAGCAATGGCGCAATGCAGCGTCATATCACCACCGACATTGATCGACACCACCACTACAACGACACCAACCCCAACAATCGCCACAAATACCTATCCATTAATAGACAATTCAGCTAATTTATTTCTACTCCAACCAGTGATGAATCCAAACGCATACATTCAATCTCAGGACAACGTTAAGGTTTCATCATGGGACGTCGAAGAACATAAACGAAAGCTTCTTATTTCATCGGGAATTGGCGACAACTTGAGCTACTTCCATTAA 1029 43.54 MAAFSYQYQPFLLDSILQANNTLKMGGFLDEPNFNINCFTQFFPQEQEPEQPIYCFPELCKQSPESFSLVEKSDSGEPVSQLKPVVTSACSKKRKGRGNNSSANSAQSKESIGKKVKTKRELDERKEGDEKGKTGKKEEKQGSEDGAPTGYVHVRAKRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSLNPIFFDFRMDLDGLMIQPESSSLSSITPQLPAMAQCSVISPPTLIDTTTTTTPTPTIATNTYPLIDNSANLFLLQPVMNPNAYIQSQDNVKVSSWDVEEHKRKLLISSGIGDNLSYFH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1577245 1579874 + CmaCh18G002970.1 Cma18g00297 313635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00297 342 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Cma18g00297 342 Gene3D - 157 227 IPR036638 GO:0046983
Cma18g00297 342 MobiDBLite consensus disorder prediction 158 174 - -
Cma18g00297 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 342 IPR024097 GO:0006355
Cma18g00297 342 MobiDBLite consensus disorder prediction 112 144 - -
Cma18g00297 342 CDD bHLH_AtBPE_like 150 235 - -
Cma18g00297 342 MobiDBLite consensus disorder prediction 70 174 - -
Cma18g00297 342 SMART finulus 166 216 IPR011598 GO:0046983
Cma18g00297 342 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 342 - -
Cma18g00297 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Cma18g00297 342 MobiDBLite consensus disorder prediction 70 111 - -
Cma18g00297 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 226 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00029 Cma18g00297 CCT
Cma13g00828 Cma18g00297 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00297 Cma-Chr18:1577245 Cma14g01524 Cma-Chr14:11539744 4.41E-45 dispersed
Cma10g00029 Cma-Chr10:106370 Cma18g00297 Cma-Chr18:1577245 5.09E-43 wgd
Cma13g00828 Cma-Chr13:6927496 Cma18g00297 Cma-Chr18:1577245 6.27E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36751 PF00010 HLH 6.60E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00297 - - csv:101205943 442.58