Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00298 ATGAAAATACCGCCGGAGAACGACCAGTTTTCTCTTTCAAACGACCGGATTTCTTCTCTTCTTGATGATATTCCGCTCATCAACAATTTCAAGGGAAAATGGTCTTCAATCAGAGCGAAACTCTCCGATCTTCGCACACAATTGATAGATGTTTCTGAGTTTCCGAATTCGTCTTCCAATCCTCTTTCTGTTGATTTTCTTCATTCTGTTTTGAAAGCTCTTAGTGAGGCGGCTTTTCTCTCGGAGAAGTGCCGGAATCCGGAACTTTCCGATGGTAAACTCAAGACTCAGAGCGATATTGACTCGGTTCTTGCGAAGTTGGACTCTCTACTTAAAGATGGTGAGGTTTTGATTCGGAGTGAGATTCTTCATGATGGTGCGGTTTCGAGTTCGTCGTCTAGGAGGGAGGCTGTGCGGGCAGAGTCGAGGAATTTAATCACGAGGTTACAGATTGGAAGCATTGAATCGAGGGTATTGGCTATTGAATCGCTGTTGAAGTTGTTGAATGAGGATGATAAGAATGTAACGATTGCTGCGGCTCAAGGGATTGTTCCTGTTCTTGTTCGGCTACTGGATTCCAGTTCTTTAGAACTGAAGGAACGGGCTGTTGCTGCTATTTCCATCGTTTCATCGGTGGATGGTGTTAGGCATTTAATGATTGCTGAAGGTCTACAGCTTTTGAATCACTTGCTGAGGATTCTCGATTCTGGTAGCGGTTTTGCTAAGGAGAAGGCCTGTTTAACCCTCCAACCTTTAAGCATTTCGAAAGAAAATGCTAGATCAATCGGTTCTAGAGGAGGAATTTCATCTCTGTTGGAGATTTGTGAGGCCGGCACTCCCGGTTCTCAAGCCTCAGCAGCTGCTGTTCTTAGAAATCTTGCATCATTTGGTGAAATTAAAGAGAATTTCATTGAAGAGAATGGGGTTATCGTTCTTTTGGGGCTTTTAGCCTCGGGAACTCCGTTAGCTCAAGAAAATGCAATTGGATGTCTATGTAATTTAGTTGCAGAAGATGATAATCTGAAGCTCTTGATCGTTAGAGAAGGTGGGATCGAGCTCTTGAGAAGTTTCTGGGATTCAGCTCCATCAGTTCATAGTCTTGAAGTGGCTGTGGAGCTTTTGGGGCTCTTGGCTTCATCTTCCCCGATCGCCGAAGCTCTTATTTCAAATGGGTTTGTTGATCGGCTTCTTCCAGCTCTAAGCTGCGGAGTATTAGGCGTTAGAACTGCAGCAGCTCGAGCAGTTCACGAGCTCGGATTCTGCACAAAAACAAGAAAAGAAATGGGGGAAGCTGGATTCATCACACCCTTGGTTAATATGTTAGATGGGAAATCTGTTGAGGAGAAAGAAGCAGCTGCCAAGGCATTGTCTTCTCTATTACAATACACAGGTAACAGAAAAATTTTCCAGAAAGAAGAGAAAGGGATAGTAAGTGCAGTCCAACTCTTAGACCCTTCAATATCAAATCTGGACAAGAAGTACCCTGTTTCATTATTAGCCTCGGTTATGATATCAAGCAAGTGTAGAAAGCAGATGGCTGCTGCTGGTGCTGGTTTATATCTTCAAAAGCTTGTTGAAATGAATGTTGATGGATCAAAGAAACTATTGGAATGTCTTGGCCGAGGTAAAATCTGGGGTGTCTTTGCCAGATCTTAG 1656 43.54 MKIPPENDQFSLSNDRISSLLDDIPLINNFKGKWSSIRAKLSDLRTQLIDVSEFPNSSSNPLSVDFLHSVLKALSEAAFLSEKCRNPELSDGKLKTQSDIDSVLAKLDSLLKDGEVLIRSEILHDGAVSSSSSRREAVRAESRNLITRLQIGSIESRVLAIESLLKLLNEDDKNVTIAAAQGIVPVLVRLLDSSSLELKERAVAAISIVSSVDGVRHLMIAEGLQLLNHLLRILDSGSGFAKEKACLTLQPLSISKENARSIGSRGGISSLLEICEAGTPGSQASAAAVLRNLASFGEIKENFIEENGVIVLLGLLASGTPLAQENAIGCLCNLVAEDDNLKLLIVREGGIELLRSFWDSAPSVHSLEVAVELLGLLASSSPIAEALISNGFVDRLLPALSCGVLGVRTAAARAVHELGFCTKTRKEMGEAGFITPLVNMLDGKSVEEKEAAAKALSSLLQYTGNRKIFQKEEKGIVSAVQLLDPSISNLDKKYPVSLLASVMISSKCRKQMAAAGAGLYLQKLVEMNVDGSKKLLECLGRGKIWGVFARS 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1588793 1590448 + CmaCh18G002980.1 Cma18g00298 313636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00298 551 SMART arm_5 421 461 IPR000225 GO:0005515
Cma18g00298 551 SMART arm_5 171 211 IPR000225 GO:0005515
Cma18g00298 551 SMART arm_5 338 379 IPR000225 GO:0005515
Cma18g00298 551 SMART arm_5 380 420 IPR000225 GO:0005515
Cma18g00298 551 SMART arm_5 255 295 IPR000225 GO:0005515
Cma18g00298 551 SMART arm_5 296 336 IPR000225 GO:0005515
Cma18g00298 551 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 8 549 - -
Cma18g00298 551 SUPERFAMILY ARM repeat 144 489 IPR016024 -
Cma18g00298 551 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 8 549 - -
Cma18g00298 551 Gene3D - 359 541 IPR011989 -
Cma18g00298 551 Gene3D - 131 358 IPR011989 -
Cma18g00298 551 Pfam Armadillo/beta-catenin-like repeat 176 207 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00298 - - - csv:101203406 910.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01933 Cma-Chr11:12722085 Cma18g00298 Cma-Chr18:1588793 4.15E-85 dispersed
Cma13g00412 Cma-Chr13:4675853 Cma18g00298 Cma-Chr18:1588793 0 dispersed
Cma17g00016 Cma-Chr17:65301 Cma18g00298 Cma-Chr18:1588793 8.11E-92 dispersed
Cma18g00298 Cma-Chr18:1588793 Cma19g01046 Cma-Chr19:8847610 1.35E-77 dispersed
Cma18g00298 Cma-Chr18:1588793 Cma14g02006 Cma-Chr14:14062883 3.57E-94 transposed
Cma18g00298 Cma-Chr18:1588793 Cma08g00930 Cma-Chr8:5804602 1.33E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g43 . . . Bda15g00690 Bpe12g00464 . . . . Cmo18g00236 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0250 Cone19ag0232 . . . . . Blo15g00195 . . . . . Bma08g00274 . . . . Cma18g00298 . Car18g00246 Cpe09g00945 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003996 1 3 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 2 1 1 1 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00298 Cma_Chr18 FPKM 6.727053 8.803068 3.413634 3.000996 7.644112 5.421377 8.3725 4.09448 4.207207 4.593576