Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00299 ATGGGTTGCGTTCTTGGCAGACAAGTCGCCAATGATTCCCGGAGCCCATCCAGACCTCCCCGTCGACGTCGGAGCACTGATCACCACTCTCATGTCGACGGAGTTAACGGCAAGAGTGTTATGGAACAGAAGAAATCGGAAGAAAAACAAGGAGTTAGGCAGGATGTGGATTCCTTGTCTGTAGAGCACCGGAGGCCTTCACCGAGTATTTGTCAGAGAAATGAGCAAGGCTGGCCGGCGTGGTTGCTAGAGGTCGCCGGTGAGGTGATGGAAGACTGGACGCCTCGTGTAGCTAATACATTTGAGAAGCTTGCTAAAATAGGGCAAGGGACGTATAGCAATGTGTACAAGGCGAGGGATCTTATTACTGGGAAAATTGTTGCTCTGAAGAAGGTCAGGTTTGATAATTTAGAACCGGAGAGCGTAAGATTTATGGCCAGAGAGATTTTGGTTCTGAGACGCCTCGATCATCCCAATGTGCTTAAGCTTGAGGGCTTAGTTACTTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTCGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAACCTCAGGTCAAATGCTACATGAAGCAATTATTGTCTGGGCTTGAACATTGTCACAATCGAGGAGTTTTGCATCGTGATATAAAGGGTTCCAATTTGCTAATTGACAGCGAAGGAATACTTAAAATAGCTGATTTTGGGTTAGCTACTTTTTTTGATCCTCAACAGAAGCAACATATGACTAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAACTATTGCTTGGAGCTACTCTTTATGGTATAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTCCATAAGATATTTAAATTGTGTGGTTCTCCAACGGAGGATTACTGGAAGAAATACAAATTGCCGAATGCAACTCTTTTTAAACCCCAACATCCATACAAACGCTGCATTGCGGAAACATTCAAGGATTTTCCATCTTCTTCTCTACCTCTCATCGAATCTCTCCTTACAATGGACCCTGATGGGCGAGGTACTGCCTCTGCTGCTCTCAATAGCGAATTCTTCACTACCAACCCTCTTGCTTGTGAACCATCAAGTCTGCCTAAATATCCTCCATGCAAAGAATTGGATATAAAGTTGAGAGATGAGGAGGCTAGAAGGCGAAGAAGACTAAGTGGTAAAGCAACAGCTGCTGATGGTGGTGGCAGGAGAGTACGAGTACGGGATCGAGTTACTCGAGCTGTCCCAGCTCCTGAAGCTAATGCAGAGATACAATCAAACTTAGATAGGTGGAGAAACACGACCAAATCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCCCCACCCCATCAAGATGGGGCAGTAGGGTATCCGCCACACGAGACATCACAGAGAGGCCATTCGTCATTTGGCGCAGCTGATGCTTCATTCAGCTCCTCCATCTTTAGTTCAAAGTCTGAATCTATCAAAACTACAGGAGCTCCAGAGGGACCTTCCCGGAGAAAGAAAACCAACAGAGATACTTCATCTCGAAAATTCATACGTGCACTCAAGCCATCAATCGGGCTATCAATGGATCTGTTGTTTAGAGGTAAATAA 1689 46.42 MGCVLGRQVANDSRSPSRPPRRRRSTDHHSHVDGVNGKSVMEQKKSEEKQGVRQDVDSLSVEHRRPSPSICQRNEQGWPAWLLEVAGEVMEDWTPRVANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLRRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDSEGILKIADFGLATFFDPQQKQHMTSRVVTLWYRPPELLLGATLYGIGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTEDYWKKYKLPNATLFKPQHPYKRCIAETFKDFPSSSLPLIESLLTMDPDGRGTASAALNSEFFTTNPLACEPSSLPKYPPCKELDIKLRDEEARRRRRLSGKATAADGGGRRVRVRDRVTRAVPAPEANAEIQSNLDRWRNTTKSNAKSKSEKFPPPHQDGAVGYPPHETSQRGHSSFGAADASFSSSIFSSKSESIKTTGAPEGPSRRKKTNRDTSSRKFIRALKPSIGLSMDLLFRGK 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1596685 1601262 + CmaCh18G002990.1 Cma18g00299 313637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00299 562 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00299 562 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00299 562 CDD STKc_CDK9_like 101 385 - -
Cma18g00299 562 Gene3D Phosphorylase Kinase; domain 1 87 183 - -
Cma18g00299 562 MobiDBLite consensus disorder prediction 1 70 - -
Cma18g00299 562 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Cma18g00299 562 Gene3D Transferase(Phosphotransferase) domain 1 184 424 - -
Cma18g00299 562 MobiDBLite consensus disorder prediction 526 543 - -
Cma18g00299 562 MobiDBLite consensus disorder prediction 492 523 - -
Cma18g00299 562 PANTHER CELL DIVISION PROTEIN KINASE 58 533 - -
Cma18g00299 562 MobiDBLite consensus disorder prediction 417 543 - -
Cma18g00299 562 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 58 533 - -
Cma18g00299 562 MobiDBLite consensus disorder prediction 16 62 - -
Cma18g00299 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Cma18g00299 562 SMART serkin_6 101 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00299 562 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00826 Cma18g00299 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01644 Cma-Chr14:12296897 Cma18g00299 Cma-Chr18:1596685 0 dispersed
Cma13g00826 Cma-Chr13:6918269 Cma18g00299 Cma-Chr18:1596685 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69278 PF00069 Pkinase 6.40E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00299 K08819 - csv:101205716 912.909