Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00306 ATGGAGCTGATTCAGAGCTTCTTGAATTTAGTAGCTCCGCCGTTCACCGTCGTCTCTCTCGGCCTATTACTGCCGCTTTACGTGGTTTTCAAGTACTTCTTCTCATTGGTTAGAGGTTTGTTTAGCGAAGATGTCACCGGGAAAGTCGTTCTGATCACCGGAGCTTCCTCCGGCATCGGTGAGAATTTGGCATATGAGTATGCCAAGAGAGGAGCTCAATTAGCGCTTGTAGCTAGACGAGAGAGATCACTTGAGGAAGCTGCTGAAGCAGCTCGCTATTATGGCTCCCCTGAGGTTATCACCATTGCAGGAGATGTCTCCGAGCTGTCGGACTGTCGGCGAATCATCGACGACACGATGAATCATTTCGGAAGATTGGATCATTTGGTGAACAATGCCGGCATTGTCAACATGACTCTGTTTGAAGAAATCAATGATATCACTTCCTTCAAACAAATAATGGAAACGAACTATTGGGGGTCTGTTTATATGACTTGGCTATCAATTCCGTATTTGAAGAACAGGAGAGGGAAGATCATAGTGGTTTCATCGGCGGCGGCGTGGTTGCCGTCACCCAGAATGAGCATTTACAATGCGAGCAAGGCGGCGCTGAGGAGTTTTTTTGAGACGTTGAGAGTGGAAATGTCGCCGGAGATTGGGATCACCGTCGTGACGCCCGGCTTTGTTGAGTCGGAGATAACTCAGGGGAAGGCGTTGTATTCTCACGGGAGAATGGAAGTTCATCAGGACGTTAGAGATGCTCTGGTGGGGGCGATTCCGGTAGATACGGCGGCGGCCTGCGCTAAGGCAATCGTGAGGAGCGCCTGCCGGGGTGATCGGTACTTGACGGAGCCGTCGTGGTACAACGCTGCGTATTACTTAAAGGCGTTTTGCCCGGAGGTGGTGGAGTGGTGCTACCGTATATTGGTGTATACAACGCCGGGAACCTCCGCCGCGGAGGCGCTCAATAAACAGATTCTGGATCTCACCGGAGCCAAGACGGCCATGTATCCTCCTTCCATTCACTCCGTCAAGATCAACGACGACTAA 1050 50.95 MELIQSFLNLVAPPFTVVSLGLLLPLYVVFKYFFSLVRGLFSEDVTGKVVLITGASSGIGENLAYEYAKRGAQLALVARRERSLEEAAEAARYYGSPEVITIAGDVSELSDCRRIIDDTMNHFGRLDHLVNNAGIVNMTLFEEINDITSFKQIMETNYWGSVYMTWLSIPYLKNRRGKIIVVSSAAAWLPSPRMSIYNASKAALRSFFETLRVEMSPEIGITVVTPGFVESEITQGKALYSHGRMEVHQDVRDALVGAIPVDTAAACAKAIVRSACRGDRYLTEPSWYNAAYYLKAFCPEVVEWCYRILVYTTPGTSAAEALNKQILDLTGAKTAMYPPSIHSVKINDD 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1629870 1631280 - CmaCh18G003060.1 Cma18g00306 313644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00306 349 PANTHER RETINOL DEHYDROGENASE-RELATED 1 341 - -
Cma18g00306 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 311 IPR036291 -
Cma18g00306 349 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Cma18g00306 349 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Cma18g00306 349 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Cma18g00306 349 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Cma18g00306 349 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Cma18g00306 349 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Cma18g00306 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Cma18g00306 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Cma18g00306 349 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Cma18g00306 349 Pfam short chain dehydrogenase 48 236 IPR002347 -
Cma18g00306 349 Gene3D - 38 313 - -
Cma18g00306 349 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1B-LIKE ISOFORM X1 1 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00306 K22418 HSD1; 11beta/17beta-hydroxysteroid dehydrogenase [EC:1.1.1.146 1.1.1.-] - csv:101219132 540.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00820 Cma18g00306 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01427 Cma-Chr6:9179333 Cma18g00306 Cma-Chr18:1629870 6.20E-22 dispersed
Cma09g01248 Cma-Chr9:8363149 Cma18g00306 Cma-Chr18:1629870 9.85E-90 dispersed
Cma13g00820 Cma-Chr13:6889787 Cma18g00306 Cma-Chr18:1629870 4.94E-179 dispersed
Cma18g00306 Cma-Chr18:1629870 Cma18g00583 Cma-Chr18:3987401 1.72E-19 dispersed
Cma18g00304 Cma-Chr18:1625454 Cma18g00306 Cma-Chr18:1629870 7.43E-130 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g78 . . . . . . . . Cmo13g00851 Cmo18g00230 . . . . . Cpe20g00296 . . . . . . . . . . . . . . . . . . . Lsi02g00518 Csa01g00980 Chy12g01152 Cme12g01573 . . . . . . Bma03g01242 . Sed08g2421 . . Cma13g00820 Cma18g00306 Car13g00664 Car18g00241 . . Bhi08g01520 Tan05g2993 Cmetu12g1667 Lac10g0600 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00306 Cma_Chr18 FPKM 6.907619 7.001678 2.945615 2.2211 1.704249 1.064871 1.953879 0.0 0.0 0.0