Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00308 ATGGGAGAGGAGGAGAAGAAGAAGCCGGAGGAGAAGAAAATGGCGGAGGAAATCGATGTTAAGAAACCAGCTGCTGATGATTTGAAGGAAAAGAAAGAGGAGAATCAGCCGTCGGAGAAATCGGCGCCGGAGAAGAAGGAGGAGGGAAAAACAGAGGAACCCAATGAAGGGAAGGATGCTAAGGAGCAGGATTCACCACCGCCGCCACCGCCGGAGATTGTTCTCAAAGTTTACATGCATTGTGAAGGCTGTGCTCGGAAAGTCCGCCGCTGTCTCAAAGGCTTTGAAGGAGTTGAAGATGTAATCACTGATTGCAAGACCCATAAAGTGATTATAAAAGGGGAAAAGGCAGATCCATTGAAGGTCTTGGACAGAGTACAGAAGAAAAGCCATAGACAAGTGGAGCTTCTATCTCCGATCCCAAAACCGCCGGCGGCGGCGGAGGAACCAAAACCAGAGGATAAAGAAACACCCAAATCTGAAGAGAAAAAAGAAGAGCCACAGGTCGTGACAGTGATATTAAGCGTTCATATGCATTGCGAGGGCTGTGCTCAAGAAATCAAGAAACGGATATTAAGAATGAAAGGGGTGGATTCAGTGGAGCCAGATCTGAAAGCCTCACAAGTTACAGTAACCGGCGTGTTCGACCCACCAAAGCTTGTGAACTTCGTGCACAGAAGAACCGGAAAACACGCCGTAATAGTGAAAACAGACCCAGAAACGAAAGAGAAAGACGGCGAGGCTAAGGAAGGGAAAGAGGAGAAAGCTAAAGAAGAAGGCGGGAAAGAGAAGAAGGGCGACGGCGGGGACGGAGAGGGGAAAGAAGGAGAGGGCGGGGGAGAGGGGAAAGACGGCGGAGAGGCGGCAGCGGCGACGTCGGAAGAGGCGAAAGTGGTGGAGGTGATAAGAAATGAGTACCAGTATTACGCACAGAGATACGCCATGGAAATGTACGCTTATCCGCCGCAGATTTTCAGCGATGAAAATCCAAATGCGTGCTCTGTTATGTGA 1011 49.75 MGEEEKKKPEEKKMAEEIDVKKPAADDLKEKKEENQPSEKSAPEKKEEGKTEEPNEGKDAKEQDSPPPPPPEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIIKGEKADPLKVLDRVQKKSHRQVELLSPIPKPPAAAEEPKPEDKETPKSEEKKEEPQVVTVILSVHMHCEGCAQEIKKRILRMKGVDSVEPDLKASQVTVTGVFDPPKLVNFVHRRTGKHAVIVKTDPETKEKDGEAKEGKEEKAKEEGGKEKKGDGGDGEGKEGEGGGEGKDGGEAAAATSEEAKVVEVIRNEYQYYAQRYAMEMYAYPPQIFSDENPNACSVM 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1639268 1640832 - CmaCh18G003080.1 Cma18g00308 313646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00308 336 ProSiteProfiles Heavy-metal-associated domain profile. 178 224 IPR006121 GO:0046872
Cma18g00308 336 CDD HMA 174 232 IPR006121 GO:0046872
Cma18g00308 336 SUPERFAMILY HMA, heavy metal-associated domain 73 129 IPR036163 GO:0046872
Cma18g00308 336 MobiDBLite consensus disorder prediction 1 74 - -
Cma18g00308 336 CDD HMA 79 135 IPR006121 GO:0046872
Cma18g00308 336 MobiDBLite consensus disorder prediction 234 282 - -
Cma18g00308 336 ProSiteProfiles Heavy-metal-associated domain profile. 79 135 IPR006121 GO:0046872
Cma18g00308 336 MobiDBLite consensus disorder prediction 1 65 - -
Cma18g00308 336 MobiDBLite consensus disorder prediction 147 168 - -
Cma18g00308 336 Gene3D - 70 142 - -
Cma18g00308 336 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 336 IPR044577 GO:0046872
Cma18g00308 336 Pfam Heavy-metal-associated domain 175 228 IPR006121 GO:0046872
Cma18g00308 336 Pfam Heavy-metal-associated domain 76 126 IPR006121 GO:0046872
Cma18g00308 336 MobiDBLite consensus disorder prediction 234 296 - -
Cma18g00308 336 SUPERFAMILY HMA, heavy metal-associated domain 167 238 IPR036163 GO:0046872
Cma18g00308 336 Gene3D - 166 235 - -
Cma18g00308 336 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 1 336 - -
Cma18g00308 336 MobiDBLite consensus disorder prediction 131 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00308 - - - csv:101218262 365.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g00024 Cma18g00308 CCT
Cma10g00050 Cma18g00308 CCT
Cma10g00050 Cma18g00308 ECH
Cma11g00024 Cma18g00308 ECH
Cma13g00818 Cma18g00308 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00591 Cma-Chr3:5279448 Cma18g00308 Cma-Chr18:1639268 1.90E-09 dispersed
Cma07g00361 Cma-Chr7:1539299 Cma18g00308 Cma-Chr18:1639268 6.01E-63 dispersed
Cma11g00024 Cma-Chr11:114385 Cma18g00308 Cma-Chr18:1639268 2.84E-80 dispersed
Cma14g01955 Cma-Chr14:13753873 Cma18g00308 Cma-Chr18:1639268 5.22E-06 dispersed
Cma16g00012 Cma-Chr16:75525 Cma18g00308 Cma-Chr18:1639268 9.60E-31 dispersed
Cma17g01430 Cma-Chr17:9417943 Cma18g00308 Cma-Chr18:1639268 4.36E-39 dispersed
Cma18g00308 Cma-Chr18:1639268 Cma18g01346 Cma-Chr18:10222326 1.55E-38 dispersed
Cma10g00050 Cma-Chr10:183213 Cma18g00308 Cma-Chr18:1639268 3.22E-82 wgd
Cma13g00818 Cma-Chr13:6882631 Cma18g00308 Cma-Chr18:1639268 1.20E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g83 . Blo16g00277 . . . . Bma06g00269 . Cmo13g00848 Cmo18g00228 Cma10g00050 Cma11g00024 Car10g00039 Car11g00024 Sed08g0021 Cpe20g00298 Cpe04g01624 Bhi02g00667 Tan09g2388 Cmetu02g1739 . Hepe09g0037 . . Cla06g01754 Cam06g1946 Cec06g1996 Cco06g2001 Clacu06g1903 Cmu06g1843 Cre06g2656 . Cone16ag0007 Cone13ag0233 Cone19ag0219 Lsi02g00515 Csa01g00978 Chy12g01155 Cme12g01577 . . Bda11g01590 Bda14g01351 . Bpe15g00226 Bma03g01247 . Sed08g2424 . Cmo11g00025 Cma13g00818 Cma18g00308 Car13g00662 Car18g00239 Cpe09g00951 Cpe18g00916 Bhi08g01515 Tan05g2989 Cmetu12g1119 Lac10g0597 Hepe07g2121 . . Cla03g00367 Cam03g0386 Cec03g0372 Cco03g0387 Clacu03g0385 Cmu03g0990 Cre03g0682 Lsi06g01653 Csa01g00043 Chy02g02675 Cme02g02079
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001843 2 2 2 2 2 2 4 2 2 2 2 2 4 2 2 3 2 1 4 2 2 2 1 2 2 2 2 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00308 Cma_Chr18 FPKM 10.430743 8.476013 5.453567 3.568466 6.639869 5.64501 5.846952 0.631863 1.104849 0.997486