Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00315 ATGATCATAAACCTTGCCTTGATGGAAGGTCAAACACAAGAATCAACCAATGCCACTGAAATCAAGGCATCTACAGATGTTTTCAGGCCAAGTAGTATGGGAGTCAAGAAAGCTCTTACTATGATACCTCCTCATATCATAGCAGAGGCGATTTCCACCATCACTGGCCTTGATCTAAGATGGTCAGGTCCTATAACACCAGCAGAAAGGCAATATGTAGAACAATATGTATTAGCCAAGTATCCACAATATGCACAACTAGATGGAGAAAAGATAGATCTTTCTTGCCTTTGCATCAACGAGGACTCAACCGATCAAACCACGTCGGATGATTGGCGAAAGTCGCCAAGAAACATCCCGAGAGAGCCTTCGACACCGTCGTTCGGAAGCAACCTCCCGAACTTGGAAGGAACCCCATTGGAGCCATCAAGATTGCTAGATATTCTCACCATGAAATGTTCATTTCCAGGGAGTTTCATATCAATTCCTGAAATTCAAGCTCAAAACAAAGTTTTGAAGCATTGTGGACTGCCTGATGAAGAGTATCTTGTTCTGTTCATACCAAGCTATAGGCTAGCCATGATGCTTGTAGGAGAAGCTTACCCTTTTTTCAGAGGGAATTACTACATGACAGTGATAAGAGATGAAGGAGATTGTATTAAAGAGTTTGCAAGTTTCAAGGAGTCTAAAGTGATAGAAGCACCGGAGAGTTGGTTGGATTTGAGGATTAAAGGATCTCAACTTAGTCAGTACTTTAGAAGGAAGTGTAAGCATAGTCCAAAAGGGTTGTTTTCTTATCCAGCTGATGTAAACGGGACTCGATACTCGTTGCATTGGGTGTCGGAGGCTCATCGGAACTCGTGGCACGTCCTTCTCGACGCGACTGCTTTTGTTGTTGGTGGGGAACGTTTGAATCCTCTTCTACATAGGCCTGACTTTGTGTTGTGCAGTCTTGATAATACACATGCAAATCCTTCTAGGATCATTTGTCTTTTGATCAGGAAGACATCGTTTGATACTACAATGGCATCGTCCCAAGCAGCTGAATGA 1050 42.95 MIINLALMEGQTQESTNATEIKASTDVFRPSSMGVKKALTMIPPHIIAEAISTITGLDLRWSGPITPAERQYVEQYVLAKYPQYAQLDGEKIDLSCLCINEDSTDQTTSDDWRKSPRNIPREPSTPSFGSNLPNLEGTPLEPSRLLDILTMKCSFPGSFISIPEIQAQNKVLKHCGLPDEEYLVLFIPSYRLAMMLVGEAYPFFRGNYYMTVIRDEGDCIKEFASFKESKVIEAPESWLDLRIKGSQLSQYFRRKCKHSPKGLFSYPADVNGTRYSLHWVSEAHRNSWHVLLDATAFVVGGERLNPLLHRPDFVLCSLDNTHANPSRIICLLIRKTSFDTTMASSQAAE 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1675694 1677354 - CmaCh18G003150.1 Cma18g00315 313653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00315 349 MobiDBLite consensus disorder prediction 103 133 - -
Cma18g00315 349 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 4 346 - -
Cma18g00315 349 PANTHER OS11G0487100 PROTEIN 4 346 - -
Cma18g00315 349 Gene3D - 163 348 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00315 - - - bhj:120083465 649.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00315 Cma-Chr18:1675694 Cma20g01137 Cma-Chr20:8992877 1.21E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g103 . Blo16g00268 . . . . Bma06g00259 . . Cmo18g00221 . . . . . . . . . . . . . . . . . . . . . Cone2ag0980 Cone16ag0016 . Cone19ag0209 Lsi02g00509 Csa01g00970 Chy12g01163 Cme12g01586 . . Bda11g01598 . . . . . Sed08g2431 . . . Cma18g00315 . Car18g00232 Cpe09g00958 . Bhi08g01500 Tan05g2974 Cmetu12g0384 Lac10g0588 Hepe07g1935 . . Cla03g00358 Cam03g0378 Cec03g0364 Cco03g0380 Clacu03g0377 Cmu03g0982 Cre03g0674 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009576 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00315 Cma_Chr18 FPKM 37.690895 34.85849 2.800826 2.459094 0.256144 0.0 0.307896 0.0 0.0 0.0