Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00319 ATGGCGACGACGACCACCAGTATTGGCGGCGGTGGCGGTGGCGGTGGCGGTGGTGAAGATAGAGTTATGGCTACGGCTCAGCAGATACTCAAAAGTCTCAACACTCCTAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGCTTCGATAATCGTCTATCTAATATCACCAGTTTGGTCAACAGTGGAGATTCGAAGAGGGAGGGGGATCGATTTGAAGCTGCTGAGAAAGTGATTCTTCGTTGGGATTCCGGTCAGGGAGCTTCTCGGAACTCCCTGTTTTGGGAGGATGCGCCGGATGAGGCAGCGGAGTACTTATCGGCGGTGGATGATATTCTTCACTGGATGGACGAGTTGTCAATTCAGTCTGATTCGGCTAAGATCGTCGAGCGTGCTGAGAACGCGATCCAGATCGCTATGTCGCGGTTTGAGGATGAGTTTCGTCATATGTTGATTCGGAGCACTGTTCCGCTGGATGCGGAGCATCTCCACGGTTCAATTCGTAGGGTTGCCCTCTCTTTTGCTTCACACGAAGGCGAAAATTCCGATGAGTTCGAATCCTTTGCCGATGTTGACCGTGGTTCGGGGATTTTCCATGAGCGTGGTATCAGTTTGGGCGACGATTTGCGCGTCGATTTGATCAATCCTGACGCCGTCGATGATCTGAAGGAGATCGTGGACCGAATGATTCGATCTGGATACGAAAGAGAGTGTCTGAATGTGTATATTAGCGTCCGCCGCGATGCTTTAGATGAGTGCTTGGTTGTTCTTGGAGTTGAGAAGCTTGGAATTGAGGATATCCAGAAAATTGACTGGAAATCTTTGGATGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCAGTGTTCGAGTTCTTTTAACTGGCGAAAAACGACTCTGTGATTATATCTTTAGTGGTTCTGACGACTCTGAGGAAGGTTGTTTCAATGAGATTGCCAAAGGGTGCGTCAGGAAATTACTCAATTTTGCAGAGGCCATTGCTATAGGGGAAAGATCAGTTGAGAAGCTATTTCGAATTCTCGATATGTATGAAGCTCTGGCATACGTTCTACCGGACTTGCAGGCTATGGTTCCTGATGAATTCGTGATCGACGAGGCGAAGGGAGTGCTTTCTAGGCTGGGAGAGGCTGCTAAAGGTACATTTTGTGAATTTGAGAATGCTGTTCGTAGTGAGACTTCTAAGAAAACGATGCTAAATGCTGAGATTCATCCGCTCGCTCGTTACGTCATGAATTACTTAAGATTGCTTGTTGTTTATAGCAACACTCTGGATGAACTTTTAGAAGGCGATGACGACGAGGATTCGTGTCGTCTAGGGGATGATGGTGGTGAGAATTTGGAGCTAGAAACCATGTCTCCGTTAGCTCGTCGATTGTTTTCATTGATAGCATCATTGGAGGGAAATCTTGAGAGGAAATCGAAACTTTATGTGGACGATTCGTTGCAATATATATTTCTCATGAACAATATACAATATATAGTGCAGAAAGTGAAAGATTCTGAGCTTGGGAAGCTCTTGGGTGACCGTTGGGTCCGTAAGCGTCGAGGCCAGGTTCGGGTATATGCAACGAGCTATCTAAGGGCTTCGTGGGGAAGATTGTTATCTTTCTTGAAGGAAGAAGGGACTGTTGGGAGCTCTAATAGTGCACTGAAACTAGCTGCTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAACTCTATAGAATTCAGACAGGTTGGAAGGTAGCAGATCCTCAACTACGAGAAGAGCTTCGAATTTCGATATCGGCAAAGGCGTTACCTGCATATCGTGCCTTCGTGGGACGACATGGAAGTCAGATAGAGAACACGAGACATGCCGGGAGGTATATAAAGTACAGTTCGGATGACTTGGAGAACTATTTATTGGATTTGTTTGAAGGATCAGCTTGTGTTCTAAACCACTTACGAAGAAAAAATAGTTCATAG 1983 45.74 MATTTTSIGGGGGGGGGGEDRVMATAQQILKSLNTPKEVRDDMLLIFSSFDNRLSNITSLVNSGDSKREGDRFEAAEKVILRWDSGQGASRNSLFWEDAPDEAAEYLSAVDDILHWMDELSIQSDSAKIVERAENAIQIAMSRFEDEFRHMLIRSTVPLDAEHLHGSIRRVALSFASHEGENSDEFESFADVDRGSGIFHERGISLGDDLRVDLINPDAVDDLKEIVDRMIRSGYERECLNVYISVRRDALDECLVVLGVEKLGIEDIQKIDWKSLDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEGCFNEIAKGCVRKLLNFAEAIAIGERSVEKLFRILDMYEALAYVLPDLQAMVPDEFVIDEAKGVLSRLGEAAKGTFCEFENAVRSETSKKTMLNAEIHPLARYVMNYLRLLVVYSNTLDELLEGDDDEDSCRLGDDGGENLELETMSPLARRLFSLIASLEGNLERKSKLYVDDSLQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRVYATSYLRASWGRLLSFLKEEGTVGSSNSALKLAALKEKFKNFNAGFEELYRIQTGWKVADPQLREELRISISAKALPAYRAFVGRHGSQIENTRHAGRYIKYSSDDLENYLLDLFEGSACVLNHLRRKNSS 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1702191 1704173 + CmaCh18G003190.1 Cma18g00319 313657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00319 660 SUPERFAMILY Cullin repeat-like 71 645 IPR016159 -
Cma18g00319 660 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 54 658 - -
Cma18g00319 660 Pfam Exo70 exocyst complex subunit 281 641 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma18g00319 660 MobiDBLite consensus disorder prediction 1 20 - -
Cma18g00319 660 Gene3D Exocyst complex component Exo70 88 650 - -
Cma18g00319 660 PANTHER EXOCYST COMPLEX PROTEIN EXO70 54 658 IPR004140 GO:0000145|GO:0006887
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00065 Cma18g00319 CCT
Cma11g00035 Cma18g00319 CCT
Cma13g00803 Cma18g00319 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00035 Cma-Chr11:162015 Cma18g00319 Cma-Chr18:1702191 0 dispersed
Cma13g01074 Cma-Chr13:8116481 Cma18g00319 Cma-Chr18:1702191 2.21E-123 dispersed
Cma14g01199 Cma-Chr14:9583679 Cma18g00319 Cma-Chr18:1702191 9.89E-150 dispersed
Cma15g00757 Cma-Chr15:3697182 Cma18g00319 Cma-Chr18:1702191 3.56E-110 dispersed
Cma10g00065 Cma-Chr10:249523 Cma18g00319 Cma-Chr18:1702191 0 wgd
Cma13g00803 Cma-Chr13:6823642 Cma18g00319 Cma-Chr18:1702191 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00319 K07195 - csv:101212753 1096.65