Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00322 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAGAGATCTTCGTCGTCGGAGGAGAAGCCATCGTCGCCGAAGCGTCAAAAGGTGGAAAATGGGTGTGGTTCAGAGAAATCGATGCCAGCGGTGGAGAATTCTAAGGAATTGTGTACCCCGCCGACTGTGGATCCTGGAGAGCATGGACCTGGTGGTGGTCCGATCGTCGGAGTTGATGCTGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCTGTCGCTGTTACCACTCCTATCGCAGAGGGAACTTCACTGGTAGGGGATAGGCCTAGGACTTCTTTTTCATCTTGGAGTCACTATGCTTCGAAGCAGAATACAAGTTTTGAGACGACGACTCCTTGGTGTAGACTTCTCTCAGAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCACATTTTACAATTGGCTCTAGTAGAGGTTGCAATTTTCCTTTGAAGGATCACACAATTAGTGGGACACTTTGCAAGATCAAGCACACTCAGCGTGAGGGTAGTACTGTAGCTGTGCTTGAAAGTACGGGAGGCAAGGGATCAGTGATGATTAATGGGTTGGCAGTCAAGAGGAACACCAGCTGTGTGCTTAATTCTGGTGACGAGGTGGTCTTCGGTGCTTTGGGGAACCATGCTTATATATTTCAGCAACTTATGAATGATGTTTCAGTTAAAGGTTTAGAGGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGTGATCCTTCTGCTGTGGCTGGGGCCTCGATTTTGGCTTCTCTTTCAAGCCTCAGAGAGGATATATCACGTTGGAAGCCTCCTTCTCAGACCAACAGTAAAACACACCAAGGTGCTGAACTACCTTCTAATTCTGTTGTTCATGATGCAATGGAACTTGACATTGATGCTCTTGAAGCCAACTCAAATCCAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGACGCTGTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACCTCAGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGACGTTCATGCGGGGATTGTTGATGGAAGGGACTTAGAGGTTTCATTTGAGAACTTTCCATATTATTTGAGTGAGAATACGAAGAATGTGCTTATTTCCGCTTCTTTCATACACTTGAAGCATAAAGAACATTCAAAGTATACATCAGAATTAAATACGGTGAATCCACGAATTCTACTTTCTGGTCCTGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGGGCCAAGCTACTCATTTTTGATAGCCACTCATTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGCCGAAGGATGGAATTAATGTAGCAAAATCTTGTAATTGTTCTAAACAGAGTATTGTATCTACTGAGATTACCAAGAACACAGATCAAATGGCTGGTGATGAAGATACACCGAGCTCTTCAAATGCTACCTTGTTTGCCCCTGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAGATTTATTGGTTCAGCTTCTGGTGGGATATATCCAACAACATCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAATACTTCGTCAAAAATTGGTGTTAGGTTCGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTTATGCTACTGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGACAAGATACTTATTGATATTTTATTTGAGGCGGTGTTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTTGGTAATATAGATTCATATTCTACTTTTAAAAGTAGACTTGAAAAGCTTCCTGACAATGTTATTGTAATTGGCTCTCATACTCATACTGACAACCGCAAGGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACAAAATTTGGCAGCAATCAAACTGCCCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTGCATGACCGAGGGAAAGAAGTCCCAAAAGCAACAAAACTTCTTACAAAATTATTTCCCAATAAAGTTACTATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGCTAGAACGAGATGCCGAAACTCTCAAAATGAAAGGAAACCTTAATCAATTGCGTGTTGTTTTGAGTAGGAGTGGAATGGATTGTGAAGGTCTAGAGACATTATGCATCAAGGATCAAACACTTACAAATGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGTGAGAGCATTCAATACGGGATTGGCATCTTACAGGCTATCCAGAATGAAACTAAGTCCTTGAAGAAGTCACTTAAGGATGTTGTTACGGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCCAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGCAAGGGGCAGTTGACTAAGGGTCTAATGCCACCCAGAAGACTGGCTGGAGGAAAATGTAAGACGATGCTCGCAAAAGCTGTGGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCCAGCATTACGTCAAAGTGGTTTGGTGAGGGTGAGAAGTACGTAAAAGCTGTTTTCTCTTTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACATGAGGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAAGACAAAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCTAACAGAGCAAAGATACTCAAAGTTATTTTGGCGAAAGAAGATTTGTCTCAGGACTTCGATTTTGATTCGGTTGCTAGTATGACAGATGGATATTCTGGGAGTGACCTTAAGGAGCATGCTGCAGCTCTCGCAGATGGCAGACCTGCTCCAGCTCTTAGTGGAAGTGAGGATATTCGACCTCTAAATATGGACGACTTCAAATACGCTCATGAACGGGTATGCGCAAGCGTTTCGTCCGAGTCCGTAAACATGACCGAGCTGTTACAATGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATAGCCGGAAACCCTAGACACCACAAACAAGCTTTAGCAATTATCAGCATCCAGTCTCGTCTTCTCATTTTTGAGTTGCAGCATCCCTGCCGGCGGCTTTCGGATTTTCGTACAGAGAAATCTCATTATTTTGAAATGGCTGTCGCACTCCATGATGTCAAATCGGCAGCCGGTTTGAAAAAGCTTGATGAGTACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGACGTTACCGTTTACGAGAGTCTCTCCAAACCCGTATCTAGCGAATATCTTAACGTGGCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCGAATCAGCTGAGGCAATTGCAACCCCACCGGGGGCGGACGCAAAGGCTGCTGATGACGATGACGATGATATGGATCTTTTCGGTGAAGAGACTGAGGAGGAAAAGAAGGCTGCTGAGGAGCGTGCAGCTTCCATCAAGGCTTCTACTAAGAAGAAGGAATCTGGCAAGTCATCAGTTCTGATGGATATCAAACCATGGGATGATGAGACTGACATGAAGAAACTTGAAGAGGCCGTGAGAAGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAGCTTGTTCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTGGATGACTTGGTGTCTGTTGACAGTTTGATTGAGGAACGTCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATTGTGGCCTTCAACAAAATATAG 4473 43.77 MVSTRRSGSLSGSNSKRSSSSEEKPSSPKRQKVENGCGSEKSMPAVENSKELCTPPTVDPGEHGPGGGPIVGVDAGEGVSSLKEDAAPAAVAVTTPIAEGTSLVGDRPRTSFSSWSHYASKQNTSFETTTPWCRLLSEFGQNSNVDIFSSHFTIGSSRGCNFPLKDHTISGTLCKIKHTQREGSTVAVLESTGGKGSVMINGLAVKRNTSCVLNSGDEVVFGALGNHAYIFQQLMNDVSVKGLEVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLREDISRWKPPSQTNSKTHQGAELPSNSVVHDAMELDIDALEANSNPEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEERNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFENFPYYLSENTKNVLISASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELPKDGINVAKSCNCSKQSIVSTEITKNTDQMAGDEDTPSSSNATLFAPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNTSSKIGVRFDKLIPDGVDLGGYCEGGYGYFCYATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNIDSYSTFKSRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGIGILQAIQNETKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKGLMPPRRLAGGKCKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSQDFDFDSVASMTDGYSGSDLKEHAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFIAGNPRHHKQALAIISIQSRLLIFELQHPCRRLSDFRTEKSHYFEMAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYESLSKPVSSEYLNVARWSNHIEALLRVSAVFGEGSGVKFESAEAIATPPGADAKAADDDDDDMDLFGEETEEEKKAAEERAASIKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEERLTVEPINEHVQSCDIVAFNKI 1490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1716278 1733426 + CmaCh18G003220.1 Cma18g00322 313660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00322 1490 SUPERFAMILY eEF-1beta-like 1398 1490 IPR036219 -
Cma18g00322 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1197 IPR027417 -
Cma18g00322 1490 Coils Coil 1373 1393 - -
Cma18g00322 1490 Coils Coil 899 919 - -
Cma18g00322 1490 CDD FHA 149 232 IPR000253 GO:0005515
Cma18g00322 1490 CDD EF1B 1399 1490 IPR014038 GO:0003746|GO:0006414
Cma18g00322 1490 ProSitePatterns AAA-protein family signature. 1081 1100 IPR003960 GO:0005524|GO:0016887
Cma18g00322 1490 MobiDBLite consensus disorder prediction 1 21 - -
Cma18g00322 1490 MobiDBLite consensus disorder prediction 326 343 - -
Cma18g00322 1490 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 1479 1490 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cma18g00322 1490 Gene3D - 937 1197 IPR027417 -
Cma18g00322 1490 MobiDBLite consensus disorder prediction 1 76 - -
Cma18g00322 1490 MobiDBLite consensus disorder prediction 283 301 - -
Cma18g00322 1490 Gene3D - 1394 1490 IPR014717 -
Cma18g00322 1490 MobiDBLite consensus disorder prediction 317 346 - -
Cma18g00322 1490 Pfam ATPase family associated with various cellular activities (AAA) 987 1107 IPR003959 GO:0005524|GO:0016887
Cma18g00322 1490 Gene3D - 1256 1341 - -
Cma18g00322 1490 SMART AAA_5 983 1111 IPR003593 -
Cma18g00322 1490 SMART EF1_GNE_2 1401 1490 IPR014038 GO:0003746|GO:0006414
Cma18g00322 1490 MobiDBLite consensus disorder prediction 545 568 - -
Cma18g00322 1490 Pfam FHA domain 153 222 IPR000253 GO:0005515
Cma18g00322 1490 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515
Cma18g00322 1490 Gene3D - 1110 1184 - -
Cma18g00322 1490 MobiDBLite consensus disorder prediction 545 583 - -
Cma18g00322 1490 Pfam EF-1 guanine nucleotide exchange domain 1403 1490 IPR014038 GO:0003746|GO:0006414
Cma18g00322 1490 Gene3D - 131 240 - -
Cma18g00322 1490 CDD AAA 988 1109 - -
Cma18g00322 1490 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 1365 1373 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cma18g00322 1490 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 362 - -
Cma18g00322 1490 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 387 1222 - -
Cma18g00322 1490 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 362 - -
Cma18g00322 1490 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 387 1222 - -
Cma18g00322 1490 SUPERFAMILY GST C-terminal domain-like 1265 1335 IPR036282 -
Cma18g00322 1490 MobiDBLite consensus disorder prediction 283 303 - -
Cma18g00322 1490 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00415 Cma-Chr8:2363970 Cma18g00322 Cma-Chr18:1716278 0 dispersed
Cma08g00498 Cma-Chr8:2826503 Cma18g00322 Cma-Chr18:1716278 5.09E-140 dispersed
Cma16g00575 Cma-Chr16:2963731 Cma18g00322 Cma-Chr18:1716278 1.59E-24 dispersed
Cma17g01099 Cma-Chr17:7736117 Cma18g00322 Cma-Chr18:1716278 0 dispersed
Cma18g00322 Cma-Chr18:1716278 Cma04g00716 Cma-Chr4:3627520 3.22E-23 dispersed
Cma18g00322 Cma-Chr18:1716278 Cma18g00323 Cma-Chr18:1733445 9.16E-146 tandem
Cma13g00801 Cma-Chr13:6793733 Cma18g00322 Cma-Chr18:1716278 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00322 - - csv:101214766 2167.89