Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00322 | ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAGAGATCTTCGTCGTCGGAGGAGAAGCCATCGTCGCCGAAGCGTCAAAAGGTGGAAAATGGGTGTGGTTCAGAGAAATCGATGCCAGCGGTGGAGAATTCTAAGGAATTGTGTACCCCGCCGACTGTGGATCCTGGAGAGCATGGACCTGGTGGTGGTCCGATCGTCGGAGTTGATGCTGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCTGTCGCTGTTACCACTCCTATCGCAGAGGGAACTTCACTGGTAGGGGATAGGCCTAGGACTTCTTTTTCATCTTGGAGTCACTATGCTTCGAAGCAGAATACAAGTTTTGAGACGACGACTCCTTGGTGTAGACTTCTCTCAGAGTTCGGTCAGAACTCCAATGTTGATATTTTCTCGTCACATTTTACAATTGGCTCTAGTAGAGGTTGCAATTTTCCTTTGAAGGATCACACAATTAGTGGGACACTTTGCAAGATCAAGCACACTCAGCGTGAGGGTAGTACTGTAGCTGTGCTTGAAAGTACGGGAGGCAAGGGATCAGTGATGATTAATGGGTTGGCAGTCAAGAGGAACACCAGCTGTGTGCTTAATTCTGGTGACGAGGTGGTCTTCGGTGCTTTGGGGAACCATGCTTATATATTTCAGCAACTTATGAATGATGTTTCAGTTAAAGGTTTAGAGGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGTGATCCTTCTGCTGTGGCTGGGGCCTCGATTTTGGCTTCTCTTTCAAGCCTCAGAGAGGATATATCACGTTGGAAGCCTCCTTCTCAGACCAACAGTAAAACACACCAAGGTGCTGAACTACCTTCTAATTCTGTTGTTCATGATGCAATGGAACTTGACATTGATGCTCTTGAAGCCAACTCAAATCCAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGACGCTGTCATAGAGGCAGGCAATGTAAAACTCTCTGGGGTGAATGATTTGATAGGGCCTTTGTTCAGGATGTTAGCTCAGTCAACTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTAATGGAAGAAAGAAACCAGTGGATTGGGGAGTTGCAGCCAGCATCAACCTCAGGAATGTCTTTGCGGTGTGCAGCATTTAAAGAAGACGTTCATGCGGGGATTGTTGATGGAAGGGACTTAGAGGTTTCATTTGAGAACTTTCCATATTATTTGAGTGAGAATACGAAGAATGTGCTTATTTCCGCTTCTTTCATACACTTGAAGCATAAAGAACATTCAAAGTATACATCAGAATTAAATACGGTGAATCCACGAATTCTACTTTCTGGTCCTGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGGGCCAAGCTACTCATTTTTGATAGCCACTCATTTTTGGGTGGTTTATCATCAAAGGAAGCAGAGCTGCCGAAGGATGGAATTAATGTAGCAAAATCTTGTAATTGTTCTAAACAGAGTATTGTATCTACTGAGATTACCAAGAACACAGATCAAATGGCTGGTGATGAAGATACACCGAGCTCTTCAAATGCTACCTTGTTTGCCCCTGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAGATTTATTGGTTCAGCTTCTGGTGGGATATATCCAACAACATCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAATACTTCGTCAAAAATTGGTGTTAGGTTCGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTTATGCTACTGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGACAAGATACTTATTGATATTTTATTTGAGGCGGTGTTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTTGGTAATATAGATTCATATTCTACTTTTAAAAGTAGACTTGAAAAGCTTCCTGACAATGTTATTGTAATTGGCTCTCATACTCATACTGACAACCGCAAGGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACAAAATTTGGCAGCAATCAAACTGCCCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTGCATGACCGAGGGAAAGAAGTCCCAAAAGCAACAAAACTTCTTACAAAATTATTTCCCAATAAAGTTACTATCCACATGCCGCAGGATGAGGGCCTTCTTGTATCATGGAAGCACCAGCTAGAACGAGATGCCGAAACTCTCAAAATGAAAGGAAACCTTAATCAATTGCGTGTTGTTTTGAGTAGGAGTGGAATGGATTGTGAAGGTCTAGAGACATTATGCATCAAGGATCAAACACTTACAAATGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGTGAGAGCATTCAATACGGGATTGGCATCTTACAGGCTATCCAGAATGAAACTAAGTCCTTGAAGAAGTCACTTAAGGATGTTGTTACGGAGAATGAATTTGAGAAAAGGCTTTTAGCAGACGTTATCCCACCCAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGCAAGGGGCAGTTGACTAAGGGTCTAATGCCACCCAGAAGACTGGCTGGAGGAAAATGTAAGACGATGCTCGCAAAAGCTGTGGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCCAGCATTACGTCAAAGTGGTTTGGTGAGGGTGAGAAGTACGTAAAAGCTGTTTTCTCTTTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACATGAGGCCATGCGAAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAAGACAAAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGATGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCTAACAGAGCAAAGATACTCAAAGTTATTTTGGCGAAAGAAGATTTGTCTCAGGACTTCGATTTTGATTCGGTTGCTAGTATGACAGATGGATATTCTGGGAGTGACCTTAAGGAGCATGCTGCAGCTCTCGCAGATGGCAGACCTGCTCCAGCTCTTAGTGGAAGTGAGGATATTCGACCTCTAAATATGGACGACTTCAAATACGCTCATGAACGGGTATGCGCAAGCGTTTCGTCCGAGTCCGTAAACATGACCGAGCTGTTACAATGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATAGCCGGAAACCCTAGACACCACAAACAAGCTTTAGCAATTATCAGCATCCAGTCTCGTCTTCTCATTTTTGAGTTGCAGCATCCCTGCCGGCGGCTTTCGGATTTTCGTACAGAGAAATCTCATTATTTTGAAATGGCTGTCGCACTCCATGATGTCAAATCGGCAGCCGGTTTGAAAAAGCTTGATGAGTACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGACGTTACCGTTTACGAGAGTCTCTCCAAACCCGTATCTAGCGAATATCTTAACGTGGCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCGAATCAGCTGAGGCAATTGCAACCCCACCGGGGGCGGACGCAAAGGCTGCTGATGACGATGACGATGATATGGATCTTTTCGGTGAAGAGACTGAGGAGGAAAAGAAGGCTGCTGAGGAGCGTGCAGCTTCCATCAAGGCTTCTACTAAGAAGAAGGAATCTGGCAAGTCATCAGTTCTGATGGATATCAAACCATGGGATGATGAGACTGACATGAAGAAACTTGAAGAGGCCGTGAGAAGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAGCTTGTTCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTGGATGACTTGGTGTCTGTTGACAGTTTGATTGAGGAACGTCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATTGTGGCCTTCAACAAAATATAG | 4473 | 43.77 | MVSTRRSGSLSGSNSKRSSSSEEKPSSPKRQKVENGCGSEKSMPAVENSKELCTPPTVDPGEHGPGGGPIVGVDAGEGVSSLKEDAAPAAVAVTTPIAEGTSLVGDRPRTSFSSWSHYASKQNTSFETTTPWCRLLSEFGQNSNVDIFSSHFTIGSSRGCNFPLKDHTISGTLCKIKHTQREGSTVAVLESTGGKGSVMINGLAVKRNTSCVLNSGDEVVFGALGNHAYIFQQLMNDVSVKGLEVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLREDISRWKPPSQTNSKTHQGAELPSNSVVHDAMELDIDALEANSNPEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVKLSGVNDLIGPLFRMLAQSTSCKLKLSKSICKQVMEERNQWIGELQPASTSGMSLRCAAFKEDVHAGIVDGRDLEVSFENFPYYLSENTKNVLISASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELPKDGINVAKSCNCSKQSIVSTEITKNTDQMAGDEDTPSSSNATLFAPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNTSSKIGVRFDKLIPDGVDLGGYCEGGYGYFCYATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNIDSYSTFKSRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGIGILQAIQNETKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKGLMPPRRLAGGKCKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSQDFDFDSVASMTDGYSGSDLKEHAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFIAGNPRHHKQALAIISIQSRLLIFELQHPCRRLSDFRTEKSHYFEMAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYESLSKPVSSEYLNVARWSNHIEALLRVSAVFGEGSGVKFESAEAIATPPGADAKAADDDDDDMDLFGEETEEEKKAAEERAASIKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEERLTVEPINEHVQSCDIVAFNKI | 1490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 1716278 | 1733426 | + | CmaCh18G003220.1 | Cma18g00322 | 313660 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00322 | 1490 | SUPERFAMILY | eEF-1beta-like | 1398 | 1490 | IPR036219 | - | |
Cma18g00322 | 1490 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 938 | 1197 | IPR027417 | - | |
Cma18g00322 | 1490 | Coils | Coil | 1373 | 1393 | - | - | |
Cma18g00322 | 1490 | Coils | Coil | 899 | 919 | - | - | |
Cma18g00322 | 1490 | CDD | FHA | 149 | 232 | IPR000253 | GO:0005515 | |
Cma18g00322 | 1490 | CDD | EF1B | 1399 | 1490 | IPR014038 | GO:0003746|GO:0006414 | |
Cma18g00322 | 1490 | ProSitePatterns | AAA-protein family signature. | 1081 | 1100 | IPR003960 | GO:0005524|GO:0016887 | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 326 | 343 | - | - | |
Cma18g00322 | 1490 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 1479 | 1490 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Cma18g00322 | 1490 | Gene3D | - | 937 | 1197 | IPR027417 | - | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 283 | 301 | - | - | |
Cma18g00322 | 1490 | Gene3D | - | 1394 | 1490 | IPR014717 | - | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 317 | 346 | - | - | |
Cma18g00322 | 1490 | Pfam | ATPase family associated with various cellular activities (AAA) | 987 | 1107 | IPR003959 | GO:0005524|GO:0016887 | |
Cma18g00322 | 1490 | Gene3D | - | 1256 | 1341 | - | - | |
Cma18g00322 | 1490 | SMART | AAA_5 | 983 | 1111 | IPR003593 | - | |
Cma18g00322 | 1490 | SMART | EF1_GNE_2 | 1401 | 1490 | IPR014038 | GO:0003746|GO:0006414 | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 545 | 568 | - | - | |
Cma18g00322 | 1490 | Pfam | FHA domain | 153 | 222 | IPR000253 | GO:0005515 | |
Cma18g00322 | 1490 | SUPERFAMILY | SMAD/FHA domain | 131 | 229 | IPR008984 | GO:0005515 | |
Cma18g00322 | 1490 | Gene3D | - | 1110 | 1184 | - | - | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 545 | 583 | - | - | |
Cma18g00322 | 1490 | Pfam | EF-1 guanine nucleotide exchange domain | 1403 | 1490 | IPR014038 | GO:0003746|GO:0006414 | |
Cma18g00322 | 1490 | Gene3D | - | 131 | 240 | - | - | |
Cma18g00322 | 1490 | CDD | AAA | 988 | 1109 | - | - | |
Cma18g00322 | 1490 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 1365 | 1373 | IPR001326 | GO:0003746|GO:0005853|GO:0006414 | |
Cma18g00322 | 1490 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 77 | 362 | - | - | |
Cma18g00322 | 1490 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 387 | 1222 | - | - | |
Cma18g00322 | 1490 | PANTHER | ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 | 77 | 362 | - | - | |
Cma18g00322 | 1490 | PANTHER | ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 | 387 | 1222 | - | - | |
Cma18g00322 | 1490 | SUPERFAMILY | GST C-terminal domain-like | 1265 | 1335 | IPR036282 | - | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 283 | 303 | - | - | |
Cma18g00322 | 1490 | MobiDBLite | consensus disorder prediction | 22 | 36 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00415 | Cma-Chr8:2363970 | Cma18g00322 | Cma-Chr18:1716278 | 0 | dispersed | |
Cma08g00498 | Cma-Chr8:2826503 | Cma18g00322 | Cma-Chr18:1716278 | 5.09E-140 | dispersed | |
Cma16g00575 | Cma-Chr16:2963731 | Cma18g00322 | Cma-Chr18:1716278 | 1.59E-24 | dispersed | |
Cma17g01099 | Cma-Chr17:7736117 | Cma18g00322 | Cma-Chr18:1716278 | 0 | dispersed | |
Cma18g00322 | Cma-Chr18:1716278 | Cma04g00716 | Cma-Chr4:3627520 | 3.22E-23 | dispersed | |
Cma18g00322 | Cma-Chr18:1716278 | Cma18g00323 | Cma-Chr18:1733445 | 9.16E-146 | tandem | |
Cma13g00801 | Cma-Chr13:6793733 | Cma18g00322 | Cma-Chr18:1716278 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00322 | - | - | csv:101214766 | 2167.89 |