Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00323 ATGGCGGTCGCACTCCATGATGTCAAATCGGCAGCCGGTTTGAAAAAGCTTGACGAGTACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAGAGTCTATCCAAACCCGTATCCAGCGAATATCTTAACGTGGCTAGGTGGAGCAATCACATCGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGCGTTAAGTTCGAATCAGCTGAGGCAATTGCAACCCCACCGGCCGGGGACGCAAAGGCTGCTGATGACGACGACGACGATATGGATCTTTTTGGTGAAGAGACTGAGGAGGAAAAGAAGGCTGCCGAGGAGCGTGCAGCGTCCATCAAGGCTTCTACTAAGAAGAAGGAATCTGGCAAGTCCTCAGTTCTGATGGATATCAAACCATGGGATGATGAGACTGACATGAAGAAACTTGAAGAGGCCGTGAGAAGCGTTGAGATGGAAGGTTTGCTCTGGGGAGCATCCAAGCTTGTTCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTGGATGACTTGGTGTCTGTTGACAATTTGATTGAGGAACGTCTGACAGTTGAACCCATAAACGAGCATGTCCAGAGCTGTGATATTGTGGCCTTCAACAAAATATGTATAATTTTGAGCTTTGGTGGTTTCAAAGATGTTGCCGAGTCCAGGGAAAATCTTTTTATTATTTGTTTACAATCTCATGTGTCTGTTTCTCGTTTCTACCTCTTCAAACTTGTTTTGTCTACTTGCTTCTATGAATCTTGA 816 44.98 MAVALHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYESLSKPVSSEYLNVARWSNHIEALLRVSAVFGEGSGVKFESAEAIATPPAGDAKAADDDDDDMDLFGEETEEEKKAAEERAASIKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVEMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEERLTVEPINEHVQSCDIVAFNKICIILSFGGFKDVAESRENLFIICLQSHVSVSRFYLFKLVLSTCFYES 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1733445 1734961 + CmaCh18G003230.1 Cma18g00323 313661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00323 271 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cma18g00323 271 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Cma18g00323 271 SUPERFAMILY GST C-terminal domain-like 9 69 IPR036282 -
Cma18g00323 271 PANTHER ELONGATION FACTOR 1-DELTA 1-RELATED 1 227 - -
Cma18g00323 271 Gene3D - 128 224 IPR014717 -
Cma18g00323 271 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Cma18g00323 271 Gene3D - 3 75 - -
Cma18g00323 271 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Cma18g00323 271 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Cma18g00323 271 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 227 - -
Cma18g00323 271 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Cma18g00323 271 Coils Coil 107 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00322 Cma-Chr18:1716278 Cma18g00323 Cma-Chr18:1733445 9.16E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00323 K03232 - csv:101215827 357.836