Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00324 ATGGCCGATCGAGCGCGCGCTACCGCTCGTTCTTTTAGCCTATGGCTCTCATCGAATCCAAGCAAGAGATGGGGAGAATTGTTTTTTCTTTCCTATACTCCATTTTGGCTAACTCTTTGCTTGGGAATCATCGTCCCTTTCAAACTCTACGAGAGTTTCACGGAAATGGAATATATGGTTCTTGGTTTGGTTGCAGCAGTTCCTTCTTTCTTGATACCAGTGGTGTGGCCTGGAGAGGTTAGTCTATGGATAGCAATCTTCAGCTACGTGGGAAATTACTTTTGGACTCACTACTTTTTCACTGTTTTGGGGGCATCTTATACGTTTCCATCATGGAGGATGAACAATGTACCTCATACGACGTTTCTTCTTACGCATGTCTGCTTTCTATTGTATCATGTCACATCCAACATGACTCTTAGAAGACTCCGGCATTCTATTGCCGGCTTGCCAGAGCATATTCAACGGGCTACCATGGTTGCATGGATTGTGGCTCTCTCATACTTCGTTGCATACTTGGAGACTCTGGCCATTTCTAATTTCCCTTACTACCAATTTCAGGATCGGGATTCAATGTACAAATTTGGCTCTCTGTTCTATGCTATCTACTTCTTCGTCAGCTTCCCAATGTTCTTGAGGATTGATGAGAAGCCTGGTGATCTCTGGGACTTGCAAAGAGTGGCCGTTGATTCTCTGGGAGCAGCAATGTTGGTGACAATCGTACTCGATCTATGGCGCATCTTCCTGGGGCCGATTGTACCAATTCCAAAAAAGCGATGCAGTGAGCCAGGGCTGCCATGGTTTCTTTAA 810 45.31 MADRARATARSFSLWLSSNPSKRWGELFFLSYTPFWLTLCLGIIVPFKLYESFTEMEYMVLGLVAAVPSFLIPVVWPGEVSLWIAIFSYVGNYFWTHYFFTVLGASYTFPSWRMNNVPHTTFLLTHVCFLLYHVTSNMTLRRLRHSIAGLPEHIQRATMVAWIVALSYFVAYLETLAISNFPYYQFQDRDSMYKFGSLFYAIYFFVSFPMFLRIDEKPGDLWDLQRVAVDSLGAAMLVTIVLDLWRIFLGPIVPIPKKRCSEPGLPWFL 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1735188 1738353 - CmaCh18G003240.1 Cma18g00324 313662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00324 269 PANTHER CYCLOEUCALENOL CYCLOISOMERASE 4 268 - -
Cma18g00324 269 PANTHER CYCLOEUCALENOL CYCLOISOMERASE 4 268 IPR020532 GO:0047793
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00324 K08246 CPI1; cycloeucalenol cycloisomerase [EC:5.5.1.9] - csv:101215719 480.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma13g00799 Cma18g00324 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00799 Cma-Chr13:6788771 Cma18g00324 Cma-Chr18:1735188 1.59E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g136 . . . . . . . . Cmo13g00831 Cmo18g00210 . . . . . Cpe20g00312 . . . . . . . . . . . . . . . . Cone16ag0023 . . Lsi02g00497 Csa01g00957 Chy12g01175 Cme12g01597 . . . Bda14g01371 . Bpe15g00212 Bma03g01261 . Sed08g2443 . . Cma13g00799 Cma18g00324 Car13g00647 Car18g00224 Cpe09g00967 . Bhi08g01470 Tan05g2947 Cmetu12g1333 Lac10g0575 Hepe07g2100 . . Cla03g00349 Cam03g0366 Cec03g0354 Cco03g0368 Clacu03g0366 Cmu03g0972 Cre03g0664 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005793 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 1 1 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00324 Cma_Chr18 FPKM 0.0 0.0 0.635623 0.423025 0.0 0.0 0.0 3.48107 3.153486 5.012143