Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00325 ATGAGCAATGTTGGCGAAACAATGGCGTTGGCTGTGTGCAGCGACAAGAACATGGGATCAGGGATTACGATTTGGGATCCGAAAACAGGCGAAACTCTCCTTCACATTCCGACTTGCGCTTCGCCTTCTTATGGTTTAATTTCCTTGAGAAACGAGTTCCTTGTTGCTTCTCAGACTCGTAAGGAAGGGTCCGTTGGTGGTGGATCCATGTTCGTTTGGTCCCTGAGCAAGCCGCAGTCCCCTCTTAGGAGCTATCCATTGGAGCCTATTGGACCACTTGCCTCAACAAAGGACGGTGTATATCTTGCAGGCGGAGCTCATTCCGGTAATATTCATCTCTGGGAGGTTGGTAGTGGTAAATTGCTTAAGCTTTGGAGTGGGCATCATAAGCCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCGGCCGATGGAATGATTTTTGTGTGGTCCATGATTAGTTTGCTGGATGTGGAACTTGTGGGAAGCGCACAGCCAATATTATACAGTCTCATGGAACATAAGTCGTCTTTAACTGGTCTAATTACTATGTCTGGCTACTCGATGTCGATGATCATTTCAAGCTCCCTCGATGGCAGTTTAAAGTTTTGGGATTTAATGTCGGGAATGATTCGGGGAACTCAAGCTCATGTAGAGGGAATCACTGAGATTGTTCTTCATCCAACTGAGCAATTTCTGTTCTCTGGGACTGTTGATGGGAAAATTTTTGCTAGCAGGCTTGAATTTGGATTGGATAACTGCATTACCATTAAAGAAAGCCAATTATTTGCATCAACAGGACACAAGGGAGCTATTACTGCTCTGGCCTTCAGTCTAATGGATCTAGTTTCTGCATCCGAGGATTGCACAGTCTGCATATGGGACATCAATAGTCAGATGATCATTCAAAAGCTTGAACACAAGAAAGGGAGAATAACCAACTTGGTAGCAGTTCCACGGTCGTCGCTGCTGATCTCTACGTCAAACCGTAAGAGAGTCTTGAAACAGTTCGACAAGTATCCCCAGCCAGCCAACTTGTCGACGAGCACAATACCTCTCTTTCCCTCTTCCCGACCCCTCGGGGAGAATCCAAATCTCATTGGATTCACAAGTGCCGGTTCACTGAATCAGCAAATATTTGATATGAAGACAGAAGGGACATCGGCAGCAATACAGATGAAAGTCGATACACGTTTACAAAGCCGAATGTGGGCGTCTAGAATGACGAAGCAAGTTATGGAGATGAACAACCATCTTCAATCACAGTTGCTTGACATGATGCAGACTCGTTTATTCCCGAAGAAACGAAAAGATCAAAGAGATCGAGTCGCTCGGACTAGGGAGAAGCATCCATTGTCATTCCATTGA 1386 45.17 MSNVGETMALAVCSDKNMGSGITIWDPKTGETLLHIPTCASPSYGLISLRNEFLVASQTRKEGSVGGGSMFVWSLSKPQSPLRSYPLEPIGPLASTKDGVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHKPIKFILFSWDDSFLITGSADGMIFVWSMISLLDVELVGSAQPILYSLMEHKSSLTGLITMSGYSMSMIISSSLDGSLKFWDLMSGMIRGTQAHVEGITEIVLHPTEQFLFSGTVDGKIFASRLEFGLDNCITIKESQLFASTGHKGAITALAFSLMDLVSASEDCTVCIWDINSQMIIQKLEHKKGRITNLVAVPRSSLLISTSNRKRVLKQFDKYPQPANLSTSTIPLFPSSRPLGENPNLIGFTSAGSLNQQIFDMKTEGTSAAIQMKVDTRLQSRMWASRMTKQVMEMNNHLQSQLLDMMQTRLFPKKRKDQRDRVARTREKHPLSFH 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1739327 1742687 + CmaCh18G003250.1 Cma18g00325 313663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00325 461 Gene3D - 2 164 IPR015943 GO:0005515
Cma18g00325 461 Gene3D - 165 345 IPR015943 GO:0005515
Cma18g00325 461 ProSitePatterns Trp-Asp (WD) repeats signature. 198 212 IPR019775 -
Cma18g00325 461 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Cma18g00325 461 PANTHER WD-REPEAT PROTEIN 18 8 452 IPR045227 -
Cma18g00325 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 125 158 - -
Cma18g00325 461 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 8 452 - -
Cma18g00325 461 Pfam WD domain, G-beta repeat 120 157 IPR001680 GO:0005515
Cma18g00325 461 Pfam WD domain, G-beta repeat 272 301 IPR001680 GO:0005515
Cma18g00325 461 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Cma18g00325 461 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Cma18g00325 461 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Cma18g00325 461 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Cma18g00325 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 125 158 IPR001680 GO:0005515
Cma18g00325 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 220 IPR001680 GO:0005515
Cma18g00325 461 SMART WD40_4 214 252 IPR001680 GO:0005515
Cma18g00325 461 SMART WD40_4 78 115 IPR001680 GO:0005515
Cma18g00325 461 SMART WD40_4 264 301 IPR001680 GO:0005515
Cma18g00325 461 SMART WD40_4 170 211 IPR001680 GO:0005515
Cma18g00325 461 SMART WD40_4 304 344 IPR001680 GO:0005515
Cma18g00325 461 SMART WD40_4 118 157 IPR001680 GO:0005515
Cma18g00325 461 MobiDBLite consensus disorder prediction 438 461 - -
Cma18g00325 461 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 310 IPR001680 GO:0005515
Cma18g00325 461 SUPERFAMILY WD40 repeat-like 10 339 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00325 K14829 IPI3; pre-rRNA-processing protein IPI3 - csv:101212515 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00425 Cma-Chr16:2121975 Cma18g00325 Cma-Chr18:1739327 1.05E-27 dispersed
Cma18g00325 Cma-Chr18:1739327 Cma03g00866 Cma-Chr3:6430815 3.08E-06 dispersed
Cma18g00325 Cma-Chr18:1739327 Cma01g01865 Cma-Chr1:12248300 1.22E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g137 . . . . . . . . . Cmo18g00209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00325 . Car18g00223 . . Bhi08g01468 . . . Hepe07g2098 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00325 Cma_Chr18 FPKM 0.195122 0.333562 0.365461 0.0 0.654131 0.923715 0.742409 0.361238 0.240281 0.322542