Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00332 ATGCTGAATGAAGCCATGGGAGAACTGATTTTCAGGTGCAAGCCTTCATCTTTTCTCTTTTTCTCGACGATCATAGCTCTGTTTTCAACAAAATCGTTAGCAATCGATAGCATAAAAGCAGGGGAATCCATTAATGGCAGTACCCAGATGTTAATTTCACCTGCAAACAAGTTTGTATTGGGAATATTCAATCCCCAGGGCTCTAAATTTCATTACTTGGGCATATGGTACAACAACATCCCACTAACTGTCGTGTGGGTCGCAAACAGAGACAACCCACTTGTAAATTCCTCTGCTCATTTAGTATTCAAAGGAGAAAACATTGTTCTTCTGAACAAAACAGGTGGGATTTTATGGACTTCCAATTCTCCACGATCAGTGAAAGAACGAGAGGTTCAGCTGTTAGATACAGGAAATTTGGTTTTAAGAGAAACAGAGTCTCAAGGTTATGTGTGGCAGAGTTTCGATTACCCGTCGGATACTCTGTTACCTGGGATGAAACTGGGTTGGGATTCGAAAACCGGCCTGAACCGAAAGTTAACGTCTTGGAAAAACCCAAATGATCCATCGTCTGGGGATTACACGTACAGTGTAGAAATGGATGGGCTTCCACAACTTGTAGTTCGTAAAGGGCCCATCATAACATTTCGGGGCGGCCCATGGTATGGTAAAAGGTTTAGTGGAAGTGGGGATCTCAAAGCAACAGCAATTTATGCGCCGAAGTTTGATTATAATGGTGATGAACACAGAGCGCTGTTTTCGTATGAGGCGAGGAACAATTTCTCTGTAAGATTGGTGCTGGGCGCGGCGGGGTTATTTCAGCAGCTGTATTGGGTGGATGATGGAGAATATTGGTACCCATTGTATACATTGCCTGGAGATGGGTGCGATGTGTATGGAATCTGTGGGGAATTTGGTGTTTGTACGTTTTCACTCACAGCAGAATGTGATTGTATGGATGGGTTTGAACCCAAATGGCCTGATGATTGGGAAATGTTTAGGCGTTCTGGTGGATGTGTTAGAAAGGACAATCGAACCTGTGGAAATGGCGAGGGGTTTAAACGAATTAGTAGTGTGAAATTTCCAGATTCTTCAGGGTATTTTGTGAATGTTAATATGAGCATTCAAGACTGTGAGGCGGCGTGTTTGAACGACTGTTCTTGCTTGGCTTATGGAATAATGGAGCTTCCAAATGGCGGCTATGGCTGTGTTACCTGGTTCCATAAACTTATGGATGTTAAATTTGTTGTTTATAATGGACAGGATCTCTATGTCAGAGTGGCTGCTTCAGAATTAGATTCAACCAACAAGAAACTTAAGGTTGCTGTCAGTGTGTCTATGGCTTCATTTCTAGGCTTCTTGGGCTTTGTTATTTGCTTTATTCTTGGGCGTAGAAGAAAAGATAGAGGTAATGTGATCACTCCTGAGATCACTGCAGGTGAGATTCTAGCTCAAGAAAATGATGTTGAGATGCCAATCTATGATCTTACAATGATCGAGGCTGCCACGGATAATTTCTCCTTCTCGAATAAGATAGGTGAAGGCGGGTTTGGTCCTGTATACAAGGGTAAGCTTTCATGTGGACAAGAGATTGCAATAAAGAGGCTGGCAGGGGGTTCTGGCCAAGGGCAAAACGAGTTTAAAAATGAAGTTACGTTGATTTCCCAACTTCAACATCGAAATCTTGTCAAGCTTCTTGGTTTTTGCATTCATAAGGAAGAAACATTACTGGTTTATGAATATATGCCAAACAAAAGCTTAGACCACTTCCTCTTCGATAACGAGAAGAGATATTTACTCAATTGGCAAAAGAGATTCGACATCATAATCGGGATATCTCGAGGACTTCTTTATCTCCACAGAGACTCGAGGCTAAGAATAATACATAGAGATCTCAAAGTAAGTAATATATTACTCGACAGTGAAATGAATCCGAAAATTTCAGACTTTGGCATGGCACGTATGTTTGGCGAAGATCAAACTATGGCAAAAACCAAAAGAGTTGTCGGTACTTATGGCTATATGTCTCCAGAATATGCACTCGACGGGTGTTTTTCATTGAAGTCTGACGTGTTTAGCTTCGGGGTCATTCTTTTGGAGATAGTTAGCGGTAAGAAGAATAGAGGGTTCTTCCATACCGATCATCAACTCAATCTTCTCGGACATGCATGGAAGCTTTGGGATGAAGGAAATGCTTTGGAGTTGATGGATACAGCATTGGAGAACAAATTCCAACCTTCTGAAGCACTACGATGCATTCAAATTGGTCTTTTGTGTGTTCAGCTGAGCCCTGATGACAGACCAACTATGTGGTCGGTGCTTTCGATGTTGGAGAGTGAAAACATGTTATCTTATCCTAAACAACCTGGGTTTTACACAGAGAGAATGTTTTCTAGGACTGATAAATCATTAGCTGAAGCCTCTACTTCCAATGAAGTGACAGTTACTTTGGTACATGGTCGTTAG 2466 41.77 MLNEAMGELIFRCKPSSFLFFSTIIALFSTKSLAIDSIKAGESINGSTQMLISPANKFVLGIFNPQGSKFHYLGIWYNNIPLTVVWVANRDNPLVNSSAHLVFKGENIVLLNKTGGILWTSNSPRSVKEREVQLLDTGNLVLRETESQGYVWQSFDYPSDTLLPGMKLGWDSKTGLNRKLTSWKNPNDPSSGDYTYSVEMDGLPQLVVRKGPIITFRGGPWYGKRFSGSGDLKATAIYAPKFDYNGDEHRALFSYEARNNFSVRLVLGAAGLFQQLYWVDDGEYWYPLYTLPGDGCDVYGICGEFGVCTFSLTAECDCMDGFEPKWPDDWEMFRRSGGCVRKDNRTCGNGEGFKRISSVKFPDSSGYFVNVNMSIQDCEAACLNDCSCLAYGIMELPNGGYGCVTWFHKLMDVKFVVYNGQDLYVRVAASELDSTNKKLKVAVSVSMASFLGFLGFVICFILGRRRKDRGNVITPEITAGEILAQENDVEMPIYDLTMIEAATDNFSFSNKIGEGGFGPVYKGKLSCGQEIAIKRLAGGSGQGQNEFKNEVTLISQLQHRNLVKLLGFCIHKEETLLVYEYMPNKSLDHFLFDNEKRYLLNWQKRFDIIIGISRGLLYLHRDSRLRIIHRDLKVSNILLDSEMNPKISDFGMARMFGEDQTMAKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTDHQLNLLGHAWKLWDEGNALELMDTALENKFQPSEALRCIQIGLLCVQLSPDDRPTMWSVLSMLESENMLSYPKQPGFYTERMFSRTDKSLAEASTSNEVTVTLVHGR 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1779036 1783276 - CmaCh18G003320.1 Cma18g00332 313670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00332 821 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 27 819 - -
Cma18g00332 821 Pfam D-mannose binding lectin 83 184 IPR001480 -
Cma18g00332 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Cma18g00332 821 SMART blect_4 42 158 IPR001480 -
Cma18g00332 821 ProSiteProfiles Bulb-type lectin domain profile. 35 155 IPR001480 -
Cma18g00332 821 Pfam S-locus glycoprotein domain 216 325 IPR000858 GO:0048544
Cma18g00332 821 CDD B_lectin 44 158 IPR001480 -
Cma18g00332 821 CDD STKc_IRAK 512 778 - -
Cma18g00332 821 SMART ntp_6 348 427 IPR003609 -
Cma18g00332 821 SUPERFAMILY Protein kinase-like (PK-like) 489 810 IPR011009 -
Cma18g00332 821 Pfam PAN-like domain 347 413 IPR003609 -
Cma18g00332 821 Pfam Protein tyrosine and serine/threonine kinase 507 776 IPR001245 GO:0004672|GO:0006468
Cma18g00332 821 Gene3D - 31 155 IPR036426 -
Cma18g00332 821 PIRSF SRK 9 821 IPR024171 GO:0004674
Cma18g00332 821 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00332 821 Gene3D Phosphorylase Kinase; domain 1 476 581 - -
Cma18g00332 821 SMART serkin_6 506 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00332 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 189 IPR036426 -
Cma18g00332 821 ProSiteProfiles PAN/Apple domain profile. 347 428 IPR003609 -
Cma18g00332 821 CDD PAN_AP_plant 344 428 - -
Cma18g00332 821 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 819 - -
Cma18g00332 821 Gene3D Transferase(Phosphotransferase) domain 1 582 788 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00695 Cma-Chr13:6328597 Cma18g00332 Cma-Chr18:1779036 0 dispersed
Cma13g00696 Cma-Chr13:6334286 Cma18g00332 Cma-Chr18:1779036 0 dispersed
Cma16g00815 Cma-Chr16:4512975 Cma18g00332 Cma-Chr18:1779036 1.21E-16 dispersed
Cma18g00332 Cma-Chr18:1779036 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma18g00332 Cma-Chr18:1779036 Cma18g00334 Cma-Chr18:1791671 2.97E-25 proximal
Cma18g00332 Cma-Chr18:1779036 Cma18g00335 Cma-Chr18:1794116 1.08E-29 proximal
Cma18g00332 Cma-Chr18:1779036 Cma18g00333 Cma-Chr18:1785097 0 tandem
Cma01g01169 Cma-Chr1:8503318 Cma18g00332 Cma-Chr18:1779036 4.36E-145 wgd
Cma13g00687 Cma-Chr13:6295714 Cma18g00332 Cma-Chr18:1779036 3.14E-84 wgd
Cma18g00332 Cma-Chr18:1779036 Cma19g00953 Cma-Chr19:8438217 3.57E-142 wgd
Cma18g00332 Cma-Chr18:1779036 Cma03g00504 Cma-Chr3:4936160 0 wgd
Cma18g00332 Cma-Chr18:1779036 Cma07g00288 Cma-Chr7:1281330 0 wgd
Cma18g00332 Cma-Chr18:1779036 Cma09g00906 Cma-Chr9:4507821 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69279 PF07714 PK_Tyr_Ser-Thr 3.80E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00332 - - bhj:120084118 1345.87