Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00333 ATGGAAAATATGACTCCCACCAGCAATCTCTTATCTTCCCTCTTTTTCTTCACACTCATACCTCTGTTTTCCAGAAACTCCATAGCAGACTATACCTTAAAACAAGGCCAATCCATTAACGATACCCAATCAATTGTTTCCGCCGCCGAGATATTTGAATTGGGATTCTTTAGTCAACCCCAAGCCACCAATTTGAAGTATTTAGCAATATGGTACAAGGGTGTCACTCCCAAAACTGTCGTTTGGGTGGCAAACAGAGATACCCCTGTTTTAAGCTCCTCTGCCACTTTAAACTTCAAAAGAGATGGAAATTTGGTTCTTATGAATCAAACAGGCGCAGCTTTTTGGTCGTCAAATTCGACAAAATCAATTCAAAATCCAATAGCTCAGCTGCTCGACACTGGAAATCTGGTTTTGAGAGATTCAAAATCAGAAGATTATGTGTGGCAGAGTTTTGATTATCCGACTGATACTCTGTTACCGGGCATGAAAATCGGGTGGGACTCCAAAACGGGTTTGAATCGAAAGCTAACATCATGGACAAGTTCAATCGATGTATCGTCGGGGGAATTCAGTTTTAGTCTCAACACAAATGGGCTTCCTCAATTCTTTGTTCATAAAGGAAACAAGACGATGTTTAGAGGTTGGCCTTGGTTCGATCATGATTTTGGGCAGAGTTATGGTAATGGATTCAATTACGATCTTGTCTTTGATGCTTCAACAGAGATATCCTTTTCATATAACGATTCAGCGCATAGCCGTACGAGAATTGTGATGGATTCAAGTGGGTCAATTCTTCGGCATGAATGGAACGATGTGGGAGAAAAATGGCGCAAAGCATACTCATTTGATGGAGCTGGCTGCAATGACTACGATTTGTGTGGGAATTTTGGTCTCTGTAATCCCGCAGTGACAACAAGTTGTGGTTGTTTATATGGGTTTGAACAAATATCAACAAAAAACTTGTCAAATGGGTGTGTTAGAAGGGATCCAAAGATCTGCGAAGCTGGAGATGGGTTTATGAAGATAAGCAAAGTGAAATGGCCTGATTCTACAGGGGATTCGGTGAACATGAAACTGGGTGTTAAAGATTGTGAGGCAGAGTGCTTGAAGGATTGCGGTTGTTTAGCGTATGGAACAGTGCAAATTCCTAAAATTGGGCTTGCCTGTGTCAATTGGTTTCACAAATTGGTTGATATTCGTTATGTTCCAGATGTTGGGTCGGGAGATGATATCTATGTGAGAGTTGCTGCTTCAGAATTAGAAGCGGCTGATGAAAAGCGTAGTGTTGCAGTGGTTGTTGCTGTGCCGATCGTATCAGTGATGGTCTTTTTGGGTTTGATTGGCGGTTGGATTTTCATTAGGAGAAGAGCTAGAGGTAACCATGAAGTTCTTATAGTTCCTCCAATTCAAGAACATGAACTAGAGATACCCATTGGCGTTCTTGAGGCAGCTACTGAGAATTTCTCTGTTTTTAATAAGATAGGAGAGGGTGGTTTTGGGTCAGTTTACAAGGGAAAGCTCCCAAATGGGCAAGAAATTGCAGTAAAAAAGCTAGCAGAAACATCAGGTCAAGGGTTGCAGGAGTTCAAAAACGAGGTCCTTTTCATTTCTCAGCTACAACATCGAAATCTTGTCAAGCTTCTTGGTTTTTGCATCCACAATGAACAAATTTTACTCATCTATGAGTATTTGCCTAACAAAAGTTTGGATTGTTTCATTTTTGATGATCAAAGACGTTCGTCGCTCACTTGGCCAAGAAGAATCGATATCATAATTGGCATAGCTCGAGGACTTCTGTATCTCCATCGAGATTCAAGGCTTCGGATCATACATAGAGATCTTAAAGCTGCGAATATTTTGTTAGACAATGAAATGAAACCGAAGATTTCTGACTTTGGTATGGCACGTATGTTTCGCGAAGATCAAACCGAAACAAAAACGAGGAGAGTTGTTGGAACTTATGGCTATATGTCTCCTGAATATGTAATAGACGGTTATTTTTCAGTGAAGTCTGATGTTTTTAGCTTTGGAGTGATGGTTCTAGAAATCGTTAATGGTAAGAAGAACAAAGGGTTTTTTCATCCCGAGCATCAACTCAATCTTCTTGGACATGCATGGAATCTTTGGAAGGAAGGAAGGAGCTTGGAATTAATAGATGTAATATTGGAGGATCAATTTGATGAACATGAAGCTTTAAGATGTATAAATATTGGGTTGTTATGTGTTCAAAGACGTCCAGAAGACAGGCCAATTATGTCGGCTGTGGTATCCATGTTGGAGAATGAGAACATGAGATTAATGGTTCCTGAACGACCTGGGTTCTATGAGGAAAGGTTCATAGAGACTGGTATTGATTCATCATTAAATGATCAACTGAGTTCTTCATCTAATAATGTCACTGTTACATTGCTTGATGGACGTTAA 2427 40.17 MENMTPTSNLLSSLFFFTLIPLFSRNSIADYTLKQGQSINDTQSIVSAAEIFELGFFSQPQATNLKYLAIWYKGVTPKTVVWVANRDTPVLSSSATLNFKRDGNLVLMNQTGAAFWSSNSTKSIQNPIAQLLDTGNLVLRDSKSEDYVWQSFDYPTDTLLPGMKIGWDSKTGLNRKLTSWTSSIDVSSGEFSFSLNTNGLPQFFVHKGNKTMFRGWPWFDHDFGQSYGNGFNYDLVFDASTEISFSYNDSAHSRTRIVMDSSGSILRHEWNDVGEKWRKAYSFDGAGCNDYDLCGNFGLCNPAVTTSCGCLYGFEQISTKNLSNGCVRRDPKICEAGDGFMKISKVKWPDSTGDSVNMKLGVKDCEAECLKDCGCLAYGTVQIPKIGLACVNWFHKLVDIRYVPDVGSGDDIYVRVAASELEAADEKRSVAVVVAVPIVSVMVFLGLIGGWIFIRRRARGNHEVLIVPPIQEHELEIPIGVLEAATENFSVFNKIGEGGFGSVYKGKLPNGQEIAVKKLAETSGQGLQEFKNEVLFISQLQHRNLVKLLGFCIHNEQILLIYEYLPNKSLDCFIFDDQRRSSLTWPRRIDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDNEMKPKISDFGMARMFREDQTETKTRRVVGTYGYMSPEYVIDGYFSVKSDVFSFGVMVLEIVNGKKNKGFFHPEHQLNLLGHAWNLWKEGRSLELIDVILEDQFDEHEALRCINIGLLCVQRRPEDRPIMSAVVSMLENENMRLMVPERPGFYEERFIETGIDSSLNDQLSSSSNNVTVTLLDGR 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1785097 1788633 - CmaCh18G003330.1 Cma18g00333 313671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00333 808 Gene3D Phosphorylase Kinase; domain 1 453 564 - -
Cma18g00333 808 Pfam PAN-like domain 334 400 IPR003609 -
Cma18g00333 808 CDD PAN_AP_plant 331 417 - -
Cma18g00333 808 ProSiteProfiles Protein kinase domain profile. 489 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00333 808 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Cma18g00333 808 Gene3D - 26 152 IPR036426 -
Cma18g00333 808 Pfam D-mannose binding lectin 79 180 IPR001480 -
Cma18g00333 808 ProSiteProfiles PAN/Apple domain profile. 334 417 IPR003609 -
Cma18g00333 808 CDD STKc_IRAK 495 762 - -
Cma18g00333 808 ProSitePatterns Protein kinases ATP-binding region signature. 495 518 IPR017441 GO:0005524
Cma18g00333 808 Gene3D Transferase(Phosphotransferase) domain 1 565 770 - -
Cma18g00333 808 PIRSF SRK 1 808 IPR024171 GO:0004674
Cma18g00333 808 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 185 IPR036426 -
Cma18g00333 808 SMART serkin_6 489 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00333 808 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 21 806 - -
Cma18g00333 808 SMART blect_4 30 155 IPR001480 -
Cma18g00333 808 CDD B_lectin 37 155 IPR001480 -
Cma18g00333 808 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 806 - -
Cma18g00333 808 Pfam S-locus glycoprotein domain 210 316 IPR000858 GO:0048544
Cma18g00333 808 SUPERFAMILY Protein kinase-like (PK-like) 476 781 IPR011009 -
Cma18g00333 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Cma18g00333 808 Pfam Protein tyrosine and serine/threonine kinase 492 760 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00694 Cma-Chr13:6322162 Cma18g00333 Cma-Chr18:1785097 1.17E-11 dispersed
Cma18g00333 Cma-Chr18:1785097 Cma13g00691 Cma-Chr13:6304253 0 dispersed
Cma18g00332 Cma-Chr18:1779036 Cma18g00333 Cma-Chr18:1785097 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69280 PF07714 PK_Tyr_Ser-Thr 4.50E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00333 - - cmos:111456701 1575.45