Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00344 ATGAATGATTTATTCTCCAATTCCTTCAAAAAATACACTGATCTGAAGCAACAGGCGTTTCTGGACAGCATGGAGCCTGGGAATGAGAGCGTGAATTTGGACAAATTCTTTGAGGAGGTTGAGAATGTTAAGGATGACATGAAACAGGTGGAGAGTTTGTACAAGAAATTGCAGCAGGACAATGAGGAGTGTAAGATTGTGCATAATGCTAAGACTATGAAGGAGCTGAGGTCCAGAATGGAGGGCGATGTGGGTCTGGTTTTAAAGCGTGTGAAAATGATCAAAGGAAAGCTTGAGGCTCTTGAGCGTTCTAATGCTGCTCATCGGAACCTCCCTGGCTGTGGCCCTGGCTCCTCTGCTGATCGTACCAGAACCTCTGTTGTTAGCGGCTTGGGAAAGAAGCTTAAGGATGTTATGGATGATTTTCAAGGGCTTAGAGCTCGAATGAACGCCGAGTACAAAGAAACCGTCGAGCGCAGGTACTTCACAGTGACAGGGCAGAAGGCAGACGAAGAGACAATAGAGAATTTGATATCAAGTGGGGAAAGCGAGAGCTTCCTGCAGAAAGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGATACCATTTCAGAGATTCAAGAACGACACGACGCAGTGAAGGAGATCGAGAAGAATCTGCTTGAGCTGCATCAGATATTCTTGGACATGGCAGCACTGGTGGAGGCCCAAGGGCACCAGCTGAATGACATCGAAAGCCATGTGGCTCATGCCAACTCCTTTGTGAGAAGAGGAACAGAGCAACTCCAAGAAGCTCGCGAGTATCAGAAAAGCTCAAGGAAATGGACTTGCTATGCCGTCATATTGGGTATCGTTCTACTCATCATTCTTCTGCTACCAATATTGAATGTGATTTTGCCTCATTTGTTGTAG 912 45.83 MNDLFSNSFKKYTDLKQQAFLDSMEPGNESVNLDKFFEEVENVKDDMKQVESLYKKLQQDNEECKIVHNAKTMKELRSRMEGDVGLVLKRVKMIKGKLEALERSNAAHRNLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKADEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAVILGIVLLIILLLPILNVILPHLL 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1843481 1845706 + CmaCh18G003440.1 Cma18g00344 313682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00344 303 SMART SynN_4 28 154 IPR006011 GO:0016020
Cma18g00344 303 CDD SNARE_syntaxin1-like 202 264 - -
Cma18g00344 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma18g00344 303 Pfam SNARE domain 240 291 IPR000727 -
Cma18g00344 303 CDD SynN 33 190 IPR006011 GO:0016020
Cma18g00344 303 SMART tSNARE_6 198 265 IPR000727 -
Cma18g00344 303 Coils Coil 33 67 - -
Cma18g00344 303 PANTHER SYNTAXIN-124-RELATED 6 294 - -
Cma18g00344 303 Gene3D - 33 160 - -
Cma18g00344 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Cma18g00344 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cma18g00344 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cma18g00344 303 Gene3D - 193 298 - -
Cma18g00344 303 PANTHER SYNTAXIN 6 294 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00822 Cma-Chr7:3806629 Cma18g00344 Cma-Chr18:1843481 3.61E-111 dispersed
Cma14g00365 Cma-Chr14:1632018 Cma18g00344 Cma-Chr18:1843481 2.75E-109 dispersed
Cma14g01106 Cma-Chr14:8118923 Cma18g00344 Cma-Chr18:1843481 4.79E-90 dispersed
Cma18g00344 Cma-Chr18:1843481 Cma20g00629 Cma-Chr20:2935522 4.02E-70 dispersed
Cma13g00676 Cma-Chr13:6245413 Cma18g00344 Cma-Chr18:1843481 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00344 K08486 - csv:101217140 522.702