Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00359 ATGCTTACAGCAATACGGCCAAGTATGAGTTGCAGCTGCTTCGGCTCCTCTAATTTGGAGAAGAAGCGGATCTCTACTCGTGCTGATAAGGATTTGGACACTGACTTGCCTGAGAATGTTAAACAATTCTCCTTCAATGAATTAAGATCTGCTACAGAGGATTTCCATTCAAATAATAGAATTGGACGCGGAGGCTTTGGAGTTGTTTACAAGGGTGTATTACGGAGAGGAGTACAAGTTGCAATAAAGAAACTTGCTATAGAGTCTAAGCAAGGGGCTCGGGAATTTTTGACAGAGATCAAAACCATTTCAAATGTCAGGCATCCAAACCTTGTTGAGTTGATTGGATGCTGTTCTCAAAATGCTAACCGGATTTTGGTCTATGAATATCTGGAAAATAATAGTCTCGACCATGCCTTGTTAGATCATAAGAATACGGGTGTTGTACTGGATTGGGGGAAGAGGTCCTCAATTTGCATTGGTACTGCTAGGGGCCTTCAATTTCTTCACGAGGAAGTCGTTCCACATATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATAAGGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCTAAACTTTTCCCGGATGATATTACGCACATTAGCACAAGAATCGCAGGAACAACTGGTTACTTGGCCCCAGAGTATGCACTGGGAGGTCAGCTAACTCCAAAGGCGGATGTGTACAGCTTTGGAATCCTCATCCTTGAAACAGTTAGTGGTAGACGTAGCAGTACAGTTTTCGGGGGAGGAATACCAATACTCTTGCTGGAACAAGTGTGGGAGTTATATAAACAAGGAAAACTTTTAGAAATAGTGGATTCTAGACTAGGAGATTATCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTCTGCACACAAGGGGCTGCAAGTCGACGGCCAGTGATGAGTCAAGTCGTCGACATGCTTACGAAGAAGATCAAGCTTAACGAGAAGCTACTTACCGCACCGGGGTTCTACGGAGGCTCGAGTGACGTTCCTGGTAGTAGCAAGAAGACGATCTCCAGCACTTCCACCAGCAACACGGCTTGCTCTGCAGTCGTCTCTATAACTCAAATCACCCCCAGATGA 1137 44.15 MLTAIRPSMSCSCFGSSNLEKKRISTRADKDLDTDLPENVKQFSFNELRSATEDFHSNNRIGRGGFGVVYKGVLRRGVQVAIKKLAIESKQGAREFLTEIKTISNVRHPNLVELIGCCSQNANRILVYEYLENNSLDHALLDHKNTGVVLDWGKRSSICIGTARGLQFLHEEVVPHIVHRDIKASNILLDKDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTPKADVYSFGILILETVSGRRSSTVFGGGIPILLLEQVWELYKQGKLLEIVDSRLGDYPQEEVLRYMKVALFCTQGAASRRPVMSQVVDMLTKKIKLNEKLLTAPGFYGGSSDVPGSSKKTISSTSTSNTACSAVVSITQITPR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1947657 1952772 - CmaCh18G003590.1 Cma18g00359 313697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00359 378 SUPERFAMILY Protein kinase-like (PK-like) 36 333 IPR011009 -
Cma18g00359 378 SMART serkin_6 55 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00359 378 CDD STKc_IRAK 61 327 - -
Cma18g00359 378 Gene3D Transferase(Phosphotransferase) domain 1 131 337 - -
Cma18g00359 378 ProSiteProfiles Protein kinase domain profile. 55 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00359 378 Gene3D Phosphorylase Kinase; domain 1 24 130 - -
Cma18g00359 378 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Cma18g00359 378 PANTHER - 7 371 - -
Cma18g00359 378 Pfam Protein kinase domain 55 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00359 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Cma18g00359 378 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00069 Cma-Chr14:314460 Cma18g00359 Cma-Chr18:1947657 3.79E-146 dispersed
Cma18g00359 Cma-Chr18:1947657 Cma19g01096 Cma-Chr19:9091084 2.67E-101 dispersed
Cma18g00359 Cma-Chr18:1947657 Cma04g00629 Cma-Chr4:3229856 1.79E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69282 PF00069 Pkinase 1.60E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00359 - - csv:101207026 602.438