Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00374 ATGCCATCTCAATGTTCTGCTGCTAAAAACACGAAGAAATTCTGTTTCTGTGGCTGTTTCGCTTCCTGTTTTCTTAATTATTCATGGGATTTGTTGAATTCGGGTACTGGAGAGCTTCTTTGGGCAACCATGGAGGATGATCCTAATTCTTGGTTAAGAAGAACCAAATTTTCCCACACAATTTGCTACCGTTTAGAGTCCTTACGATTGTCTTCCTTTCCTATCACAGCTCCTTATCATCATAAATCTACCCTTAACAAGCAGAGGTCTCTATCTCCACCTTCACAAACTACACTCTTAGGCACATTTAAGGATGCACGTAATGATTCGAAGCGATTTTCAACTCCTCAACCTCGTAGACAAGAGCCGAGAAAAGAGAAGGGTAAAAGGGTATTCAATAAAGAAGCTAAGGTGCATAATTTCTCAAAGGAAGAGAAGTTAAGAAGCCCTGTAAGGCATCTTGCATCATGTAAAGGCAATGAGAGATCCACGTTCATGAAGGAGGGTTCTTGGACAAAATTGTTTGAACACAAAAGAGGGAAGGTCACTGCTGTTGATGCTGTAGATGAATTCTCTGTTGACTTGTCTAAGTTGTATTTTGGATTTAAATTTGCTTATGGAGCTCATAGTTGCCTTTACCACGGACTTTACTTCGACCAAGTTGTTGCTATTAAGGTCATCAATCTACCAAAACACGACGAAAATGGCGATCTTGCAGGTCGCATAACGAAGCAGTTTGGTCGGGAAGTAATCCTTTTATCTCGTCTTCATCATCCCAATGTTATTAAGTTGGTAGCAGCTTGCAGAAAGCCTGGTTATTGGATCATAACAGAGTATCTATCTCAAGGTTCGTTAAGGGCATATCTACACAAACTTGAAAACAAATCTCTACCACTTCAAAAACTGATTGCCATTGCATTGGACATTGCTCGTGGAATGGAATACATTCATTCGCAACGCATCATTCATCGAGATCTCAAACCCGAAAACGTTCTTATCGATCAAGACTTTTGTCTTAAGATTGCTGATTTCGGCATTGCTTGTGAGGAAGCACATTGTGATACACTGGCCGACGACCTCGGAACTTACCGTTGGATGGCCCCCGAGATGATCAAACGTAAACATTACGGACGGAAGGTCGATCTCTACAGCTTTGGACTTATCCTGTGGGAATTGGTGGCAGGAAGAATCCCTTATGAGAATATGACTCCAATCCAAGCAGCTTATGCAGTTGTTAACAAGAATATCCGACCAGTCGTCCCGAGCGAGTGTCCTCCGGTGATGCGGGGATTGATAGAGCAATGTTTGTTGGTGCAACCAGCAAACCGGCCGGAGTTTTGGGAGGTGGTGAAAGTGCTAGAGCAACTCGAGAGTTCAGTTGGGGGAGATGGGACATTGGTGAATGTAGAGCAGAAGCCAAGTTGGGAAGTTCACAAGAAAGGTTTAAAGCATTGGATACAAAAGCTTGGTACTCATCATTCCCACACTTCTCTATCCTCCAAATCTAAATTCATATGA 1518 42.49 MPSQCSAAKNTKKFCFCGCFASCFLNYSWDLLNSGTGELLWATMEDDPNSWLRRTKFSHTICYRLESLRLSSFPITAPYHHKSTLNKQRSLSPPSQTTLLGTFKDARNDSKRFSTPQPRRQEPRKEKGKRVFNKEAKVHNFSKEEKLRSPVRHLASCKGNERSTFMKEGSWTKLFEHKRGKVTAVDAVDEFSVDLSKLYFGFKFAYGAHSCLYHGLYFDQVVAIKVINLPKHDENGDLAGRITKQFGREVILLSRLHHPNVIKLVAACRKPGYWIITEYLSQGSLRAYLHKLENKSLPLQKLIAIALDIARGMEYIHSQRIIHRDLKPENVLIDQDFCLKIADFGIACEEAHCDTLADDLGTYRWMAPEMIKRKHYGRKVDLYSFGLILWELVAGRIPYENMTPIQAAYAVVNKNIRPVVPSECPPVMRGLIEQCLLVQPANRPEFWEVVKVLEQLESSVGGDGTLVNVEQKPSWEVHKKGLKHWIQKLGTHHSHTSLSSKSKFI 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2041128 2043811 - CmaCh18G003740.1 Cma18g00374 313712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00374 505 Gene3D Phosphorylase Kinase; domain 1 187 281 - -
Cma18g00374 505 SUPERFAMILY Protein kinase-like (PK-like) 187 453 IPR011009 -
Cma18g00374 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Cma18g00374 505 ProSiteProfiles Protein kinase domain profile. 198 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00374 505 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 47 478 - -
Cma18g00374 505 PRINTS Tyrosine kinase catalytic domain signature 315 333 IPR001245 GO:0004672|GO:0006468
Cma18g00374 505 PRINTS Tyrosine kinase catalytic domain signature 424 446 IPR001245 GO:0004672|GO:0006468
Cma18g00374 505 PRINTS Tyrosine kinase catalytic domain signature 361 371 IPR001245 GO:0004672|GO:0006468
Cma18g00374 505 PRINTS Tyrosine kinase catalytic domain signature 380 402 IPR001245 GO:0004672|GO:0006468
Cma18g00374 505 PRINTS Tyrosine kinase catalytic domain signature 277 290 IPR001245 GO:0004672|GO:0006468
Cma18g00374 505 Gene3D Transferase(Phosphotransferase) domain 1 282 502 - -
Cma18g00374 505 Pfam Protein tyrosine and serine/threonine kinase 218 453 IPR001245 GO:0004672|GO:0006468
Cma18g00374 505 PANTHER TYROSINE KINASE FAMILY PROTEIN 47 478 - -
Cma18g00374 505 MobiDBLite consensus disorder prediction 108 130 - -
Cma18g00374 505 SMART serkin_6 198 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00374 505 CDD STKc_MAP3K-like 207 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00893 Cma-Chr13:7203622 Cma18g00374 Cma-Chr18:2041128 1.29E-98 dispersed
Cma18g00163 Cma-Chr18:825651 Cma18g00374 Cma-Chr18:2041128 8.89E-99 dispersed
Cma13g00640 Cma-Chr13:6076993 Cma18g00374 Cma-Chr18:2041128 0 wgd
Cma18g00374 Cma-Chr18:2041128 Cma03g01267 Cma-Chr3:8307182 0 wgd
Cma18g00374 Cma-Chr18:2041128 Cma07g00240 Cma-Chr7:1094237 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69284 PF07714 PK_Tyr_Ser-Thr 1.70E-56 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00374 - - csv:101222817 671.774