Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00392 ATGCTTCTCCTTATCTTCATCTCCGCCTTCCTCTCAAACCCTTCTCTCCTCTCCCTCTCCCTCTCCCAAGAAGGCCTCTATCTCCACACCGTTAAGCTCTCCCTCGACGACCCTGATTCCGCCCTCCGCTCATGGAACGACCGCGACGACACTCCCTGCTCCTGGTTCGGCGTCTCTTGCGACCCCACAACCAACTCCGTCCACTCCCTCGACCTCTCTAACACCAACATCGCCGGCCCATTTCCTTCCCTCCTTTGCCGTCTCCAGAATCTCTCTACCATTTCCCTCTTCAACAATTCCATCAACATGACCCTTCCCTCTACTATTTCCGAGTGTTCTAGCCTCCAGCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGAGCTACCCACTTCCATTTCTGATCTCCCCAACCTCCGGTATTTGGATTTAACTGGTAATAACTTCTCCGGCGACATTCCGGCGAGTTTTGCTCTGTTTCGAAAGTTGGAGGTTCTGTCTCTGGTTTATAATCTTCTCGATGGGCCGATGCCGGCGTTTCTCGGCAACATTACAACGTTGAAGATGTTGAATCTGTCGTACAACCCATTTGCGCCGAGCCGTATCCCGCCGGAGTTTGGGAATTTGACGAATCTTGAGGTTCTTTGGCTGACTCAGTGTAATTTAATTGGGGAAATTCCGCCGTCTCTTGGTCGGTTGAAACGGCTGACCGATTTGGACTTGGCGTTGAATAATCTTTATGGTCCTATTCCAAAATCGTTGACGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAACAACTCGTTAACAGGGGAATTGCCTTCTGGGTTTTCGAATCTGACCTCATTACGGCTGTTTGATGCGTCGATGAACGGTTTAAATGGAGTGATTCCGGATGAGTTGTGTCGGTTGCCGCTTGAGAGTCTCAATCTCTATGAGAACAAGTTCGAGGGTACGTTACCGGAAAGCATTGCGAACTCGCCGGGCTTGTATGAACTCAGACTGTTCAGTAACCGGCTCACCGGCGAGTTACCACGAAATCTTGGGAAGAACTCTCCGTTGAGATGGATTGATGTTTCCGACAACCAGTTTTCCGGGGAACTCCCAGGGGATTTGTGTGAGAAAGGCGAGTTAGAGGAGCTTCTAATGATCAACAACAACTTTTCCGGGGAGATTCCGGCGAGTTTAGGTGGATGCGAGAGTTTAACAAGGGTCCGATTGGGTTACAATCGGTTTTCCGGCGAGGTTCCGCCGCGATTTTGGGGGCTCCCACATGTTTATCTATTCGAACTAGTGAGCAACTCGTTTTCCGGGGGAATTTCCGATGACATTGCTACTGCAAAGAACCTTTCGATTTTCATTATCTCGAAGAACAACTTCTCCGGCACGATACCGGCGGAGATTGGGGAGCTGGAGAATCTTGTGAAATTGTTAGCGACTGATAACAAACTCAATGGATCTTTACCAGAAAATCTTGCGAATCTCAGGAAGCTTTCGAGTTTGGATCTTCAAAATAATGATCTCTCTGGAGAACTTCCCAATGGAATCAAATCCTGGAGGAATCTCAACGAACTCAATTTAGCAAACAATGAATTTTCCGGCGAAATACCTGAAGAAATCGGCGCTTTGCCGGTTCTTAATTATCTCGATCTCTCTGGGAATCAATTTTCCGGCAACATCCCAAATGGGTTACAGAATTTGAATCTAAATCTGCTGAATCTATCAAACAATCGCTTGTCCGGTGAGCTTCCGCCGTTCTTAGCCAAAGGAAACTACGGAAACAGCTTTCTGGGGAACCCAGATCTGTGTGGACATTTGGAAAGATTATGCAATAACAAGGATGAATCGAAGAGCGAAGGCTATCTCTGGTTGCTGCGTTCGATCTTCTTCCTCGCGAGTATCGTGTTCGTCGTCGGCGTCGTCTGGTTTTACCTCAGATACCGAAAGTTCAAGATGGCTAAGAGAGAAATGGAGAAGGGGAAATGGACATTGATGTCGTTTCACAAGTTGGATTTCAGTGAATATGAGATATTGGATTGTCTTGATGAAGATAACATTATAGGTAGTGGCTCTTCTGGTAAAGTTTACAAGGTTGTGCTCAACAATGGTGAGGCGGTCGCCGTGAAGAAACTGTTCGGAGGGATGAAGAAAGAAGGCGGCGGGGGTGGCGGTGGCGACATCGAGAAGGGTCAAGTTCAAGACAATGGCTTCGAAGCCGAAATCGAAACGTTGGGGAAGATAAGACATAAGAACATTGTGAAGTTATGGTGTTGTTGCATTACTAGAGATTACAAGCTTTTGATCTATGAATATATGGTTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGATTGCTGGATTGGCCTACTAGGTTTAAGATTGCTTTGGATGCTGCTGAAGGGCTTTCTTATCTTCATCACGATTGCGTCCCTCCGATCGTACATCGAGACATTAAGTCTAACAATATCTTGTTGGATGGTGATTTCGGAGCTAGGTTGGCGGATTTCGGTGTAGCTAAGGTCATTGATTCGACTCCAATGGGACCGAAATCCATGTCGGTCATCGCAGGTTTCGGCGTGGTGATCCTAGAGCTGATAACGGGGAGGCTCCCGATGGATCCGGAGTTCGGGGAGAAGGATTTAGTGAAATGGGTATGTTTCAAATTAGACCAAGAAGGGATTGAGCAAGTGATGGACACCAAACTAGAGAGTTGTTTCAAGGAAGAGATATGCAGAGTGCTAAACATAGGGCTGCTGTGCACCAGCCCTCTGCCCATCAACCGCCCATCTATGAGGAAAGTGGTGAAAATGCTGCAAGAAGTAGGCGCGGCGGACAACCAAATGAAAGGCGGCAACAACAACAACAAGGATGGGAAATTAACGCCATATTATTACGAAGAAGATGCTTCAGATCAGGGAAGTGTAGCAGCAGCATCATAG 2952 47.26 MLLLIFISAFLSNPSLLSLSLSQEGLYLHTVKLSLDDPDSALRSWNDRDDTPCSWFGVSCDPTTNSVHSLDLSNTNIAGPFPSLLCRLQNLSTISLFNNSINMTLPSTISECSSLQHLDLSQNLLTGELPTSISDLPNLRYLDLTGNNFSGDIPASFALFRKLEVLSLVYNLLDGPMPAFLGNITTLKMLNLSYNPFAPSRIPPEFGNLTNLEVLWLTQCNLIGEIPPSLGRLKRLTDLDLALNNLYGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLNGVIPDELCRLPLESLNLYENKFEGTLPESIANSPGLYELRLFSNRLTGELPRNLGKNSPLRWIDVSDNQFSGELPGDLCEKGELEELLMINNNFSGEIPASLGGCESLTRVRLGYNRFSGEVPPRFWGLPHVYLFELVSNSFSGGISDDIATAKNLSIFIISKNNFSGTIPAEIGELENLVKLLATDNKLNGSLPENLANLRKLSSLDLQNNDLSGELPNGIKSWRNLNELNLANNEFSGEIPEEIGALPVLNYLDLSGNQFSGNIPNGLQNLNLNLLNLSNNRLSGELPPFLAKGNYGNSFLGNPDLCGHLERLCNNKDESKSEGYLWLLRSIFFLASIVFVVGVVWFYLRYRKFKMAKREMEKGKWTLMSFHKLDFSEYEILDCLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMKKEGGGGGGGDIEKGQVQDNGFEAEIETLGKIRHKNIVKLWCCCITRDYKLLIYEYMVNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDIKSNNILLDGDFGARLADFGVAKVIDSTPMGPKSMSVIAGFGVVILELITGRLPMDPEFGEKDLVKWVCFKLDQEGIEQVMDTKLESCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAADNQMKGGNNNNKDGKLTPYYYEEDASDQGSVAAAS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2147366 2150919 + CmaCh18G003920.1 Cma18g00392 313730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00392 983 Gene3D Phosphorylase Kinase; domain 1 647 772 - -
Cma18g00392 983 Gene3D Ribonuclease Inhibitor 259 327 IPR032675 -
Cma18g00392 983 Pfam Leucine Rich Repeat 547 568 IPR001611 GO:0005515
Cma18g00392 983 Pfam Leucine Rich Repeat 211 232 IPR001611 GO:0005515
Cma18g00392 983 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Cma18g00392 983 ProSiteProfiles Protein kinase domain profile. 682 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00392 983 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Cma18g00392 983 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Cma18g00392 983 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 12 955 - -
Cma18g00392 983 Gene3D Ribonuclease Inhibitor 180 258 IPR032675 -
Cma18g00392 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Cma18g00392 983 SMART LRR_sd22_2 233 259 - -
Cma18g00392 983 SMART LRR_sd22_2 472 495 - -
Cma18g00392 983 SMART LRR_sd22_2 112 138 - -
Cma18g00392 983 SMART LRR_sd22_2 496 525 - -
Cma18g00392 983 Gene3D Transferase(Phosphotransferase) domain 1 773 860 - -
Cma18g00392 983 Gene3D Transferase(Phosphotransferase) domain 1 861 967 - -
Cma18g00392 983 Gene3D Ribonuclease Inhibitor 328 615 IPR032675 -
Cma18g00392 983 SMART serkin_6 682 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00392 983 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Cma18g00392 983 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 12 955 - -
Cma18g00392 983 Pfam Protein kinase domain 684 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00392 983 SUPERFAMILY Protein kinase-like (PK-like) 674 942 IPR011009 -
Cma18g00392 983 SUPERFAMILY RNI-like 358 585 - -
Cma18g00392 983 SMART LRR_typ_2 281 305 IPR003591 -
Cma18g00392 983 SMART LRR_typ_2 88 112 IPR003591 -
Cma18g00392 983 SMART LRR_typ_2 184 208 IPR003591 -
Cma18g00392 983 SMART LRR_typ_2 544 567 IPR003591 -
Cma18g00392 983 SMART LRR_typ_2 496 519 IPR003591 -
Cma18g00392 983 SMART LRR_typ_2 136 159 IPR003591 -
Cma18g00392 983 SMART LRR_typ_2 209 233 IPR003591 -
Cma18g00392 983 MobiDBLite consensus disorder prediction 949 983 - -
Cma18g00392 983 SUPERFAMILY RNI-like 69 412 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01291 Cma18g00392 CCT
Cma13g00622 Cma18g00392 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01798 Cma-Chr11:12031664 Cma18g00392 Cma-Chr18:2147366 0 dispersed
Cma18g00392 Cma-Chr18:2147366 Cma01g01456 Cma-Chr1:10227901 0 dispersed
Cma13g00622 Cma-Chr13:5990548 Cma18g00392 Cma-Chr18:2147366 0 wgd
Cma18g00392 Cma-Chr18:2147366 Cma03g01291 Cma-Chr3:8390120 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69285 PF00069 Pkinase 5.70E-29 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00392 - - cmos:111457094 1814.28