Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00396 ATGCCTGTCTCTTCTTTATCTTCTTCTTCTTCCCCTCTCTCTCCCCTCTGTTTTCTCACTCTGCTTCTCATTTTCATCACACCATCAGAATGTGCTGCAACACCAGCACCTAAAAAGGCCCCCGCCCGCCGCCACCGCCTCCTCTCTGTCGACTACTACACCAAAACATGCCCTTACCTCGAGCAACTCGTCTCCTCAATCACCACCCAACAGTTCAGAGACGTACCAGTCTCAGCTCCAGCAACACTCCGCCTGTTCTTTCATGATTGCTTTGTAGAAGGCTGTGATGGGTCGATTCTGATATCGACGAAGCCTGGCAGCAAAGTGGCAGCGGAGAAGGATGCAGCGGACAACAAGGGGCTGAGACCGGAGGGGTTTGAAAGCATCAAGAAGGCCAAGGCGTTGGTTGAGAGCAAGTGCCCTGGCGTTGTGTCTTGTGCTGACATCCTCGCAATTGCAGCCCGAGATTTTGTCCATTTGGCAGGAGGACCGTATTACCAGGTGAAAAAGGGACGATGGGACGGGAAGATATCAATGGCGGCCAGAGTAGGTTCCAATCTGCCGCAAGCAAACTCCACCGTTGATCAGCTTCTCAAACTCTTCAATTCCAAAGGTCTATCAAGCGATGACCTCGTTGTGCTCTCCGGTGCGCACACGATCGGATTTGCGCACTGCGAGCATTTCACAAACCGTCTCTACGACTACAGAGGCACGAAAAAACCGGATCCGGCGATCGACGGGAGACTACTCAAGGAGCTTAAAATGTCGTGCCCTAGGTACGGTGGAAATACGGATATAGTGGCGCCGTTCGATGTAACAACACCGTTTGTGTTCGACCATGCGTACTACGGGAATTTGGAAAGTAAACTAGGGCTGTTGGCTACGGATCAAGCTCTGGTGTCGGATGCGAGGATGAAGACGATGGTGCAGAGCTTGGCGAAAGATAAGCAGAAGTTTTTTCAAGCTTTCGCGGCGGCGATGGACAAAATGGGGTCGATCGGAGTGAAGAGGGGGCGACGACATGGAGAGCGACGAACGGATTGTAGCGTTCATCAGAGTTGA 1062 52.26 MPVSSLSSSSSPLSPLCFLTLLLIFITPSECAATPAPKKAPARRHRLLSVDYYTKTCPYLEQLVSSITTQQFRDVPVSAPATLRLFFHDCFVEGCDGSILISTKPGSKVAAEKDAADNKGLRPEGFESIKKAKALVESKCPGVVSCADILAIAARDFVHLAGGPYYQVKKGRWDGKISMAARVGSNLPQANSTVDQLLKLFNSKGLSSDDLVVLSGAHTIGFAHCEHFTNRLYDYRGTKKPDPAIDGRLLKELKMSCPRYGGNTDIVAPFDVTTPFVFDHAYYGNLESKLGLLATDQALVSDARMKTMVQSLAKDKQKFFQAFAAAMDKMGSIGVKRGRRHGERRTDCSVHQS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2168011 2170384 - CmaCh18G003960.1 Cma18g00396 313734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00396 353 SUPERFAMILY Heme-dependent peroxidases 48 350 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601
Cma18g00396 353 PANTHER PEROXIDASE 25-RELATED 37 348 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 CDD secretory_peroxidase 48 350 IPR033905 GO:0004601|GO:0042744
Cma18g00396 353 Gene3D - 51 350 - -
Cma18g00396 353 ProSiteProfiles Plant heme peroxidase family profile. 47 352 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 ProSitePatterns Peroxidases proximal heme-ligand signature. 210 220 IPR019793 -
Cma18g00396 353 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Plant peroxidase signature 124 137 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Plant peroxidase signature 143 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Plant peroxidase signature 162 177 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Plant peroxidase signature 209 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Plant peroxidase signature 269 284 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Plant peroxidase signature 285 302 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Plant peroxidase signature 325 338 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Haem peroxidase superfamily signature 144 161 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Haem peroxidase superfamily signature 162 174 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Haem peroxidase superfamily signature 210 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PRINTS Haem peroxidase superfamily signature 271 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 PANTHER PEROXIDASE 19 37 348 - -
Cma18g00396 353 Pfam Peroxidase 71 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00396 353 Gene3D Peroxidase, domain 2 188 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00396 Cma-Chr18:2168011 Cma13g00904 Cma-Chr13:7246240 1.84E-90 dispersed
Cma18g00396 Cma-Chr18:2168011 Cma15g00075 Cma-Chr15:360910 1.55E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00396 K00430 - csv:101216263 620.928