Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00411 ATGATGGCGGAGAGAAACAAGTATGAAGACGACGAGGGTGGAATCAAGCTATTTGGGACAACAATTGTGTTGCAAAATAAGAGGCAAATGAAAGAAGAAGACACCAACAAATCAGAATCAGCTGAAAAAAAACCGGACAAGATGATTCCTTGCCCAAGATGCCAAAGCCCCGACACCAAATTTTGTTATTTCAATAACTACAACGTTAATCAGCCAAGACATTTCTGTAAGGGCTGCCAGAGATACTGGACGGCCGGTGGCGCCCTCCGCAACGTCCCCGTCGGAGCCGGCCGCCGGAAAACCAAACCTCCTTGTCGGACCTTTGATGGGTTGCCGGAGAATTGTGTCTTTGATTCTTCAGGGATGGTGGCGGTGCAGCCGTTTGAGTTGGAGGAGTGGCACGGTGGTTTCAACCAAATTTCACCGGTGAAGCGGCGGAGAGATTGCCAAGATGGTCAAACCTGTTGA 468 49.36 MMAERNKYEDDEGGIKLFGTTIVLQNKRQMKEEDTNKSESAEKKPDKMIPCPRCQSPDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFDGLPENCVFDSSGMVAVQPFELEEWHGGFNQISPVKRRRDCQDGQTC 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2242124 2242591 - CmaCh18G004110.1 Cma18g00411 313749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00411 155 Pfam Dof domain, zinc finger 46 102 IPR003851 GO:0003677|GO:0006355
Cma18g00411 155 MobiDBLite consensus disorder prediction 26 47 - -
Cma18g00411 155 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Cma18g00411 155 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 11 148 - -
Cma18g00411 155 MobiDBLite consensus disorder prediction 27 47 - -
Cma18g00411 155 Coils Coil 24 44 - -
Cma18g00411 155 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Cma18g00411 155 PANTHER CYCLIC DOF FACTOR 2 11 148 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00189 Cma18g00411 CCT
Cma03g01320 Cma18g00411 CCT
Cma13g00606 Cma18g00411 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00411 Cma-Chr18:2242124 Cma18g01146 Cma-Chr18:9232241 8.48E-36 dispersed
Cma13g00606 Cma-Chr13:5932833 Cma18g00411 Cma-Chr18:2242124 4.20E-77 wgd
Cma18g00411 Cma-Chr18:2242124 Cma03g01320 Cma-Chr3:8520805 1.94E-49 wgd
Cma18g00411 Cma-Chr18:2242124 Cma07g00189 Cma-Chr7:896540 3.65E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36765 PF02701 zf-Dof 1.00E-31 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00411 - - cmax:111490555 339.732