Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00420 ATGGAGAAAAAGGGTACCATTTTAATGCAAAGATATGAGCTTGGGAGGCTTCTTGGACAGGGAACTTTCGCCAAAGTCTACCATGCTCGTAATCTCAAGTCAGGCCAGAGCGTGGCGATTAAGATTATTGATAAAGAGAAAGTGCTGCGTGTTGGGTTGATCGATCAAATCAAGAGGGAAATCTCTGTGATGCGCCTTGTCCGCCATCCTAATGTGGTGAAGCTCTATGAGGTGATGGCTAGCAAGACCAAGATCTATTTTGCCATGGAGTTTGTCAAAGGTGGGGAGCTTTTTAACAAAGTGGCTCGAGGGAAGCTCAAGGAAGATGCTGCTCGTAAGTACTTTCAGCAGCTCATTGGTGCTGTTGATTATTGTCATAGCCGTGGTGTGTATCATAGAGATATCAAGCCTGAGAATCTCCTTCTTGATGAGTTTGGGAATCTTAAGATTTCGGATTTTGGGTTGAGTGCTTTGGCTGAGTCTAGACGCCAAGATGGGCTCCTTCATACCACTTGTGGTACCCCTGCTTATGTCGCCCCTGAAGTCATCAACAAAAAAGGTTATGATGGAGCTAAAGCTGACATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTAGCTGGTTATCTCCCTTTCAACGAACAAAATCTAATGGAAATGTACAAAAAAATCACCAGAGGAGAATTCAAATGCCCTCAATGGTTTCCCCCAGAAGCTCGCAAGCTCCTCTCAAGAATCCTCAATCCATGTCCTTTCACAAGAATAAACATGGCCACACTCATGGAAAATTCCTGGTTCAAAAAGGGTTTCAAGGCAAATGTAGCAACTCCAAAACCCCTTCAAATCAAAGGCGACATCTCGTCTATAAGCGATGTCGAGGTCGCTTTAGACGAGGGAAGCTCTGTTAGTAACAGCAGCATTGAGAGTGGAAGGCCACCAACAAGAACTAATTCCTTCAATGCATTTGATATCATATCCCTCTCACAAGGTTTTGATCTGTCAGGTCTGTTTGAGAATGATATGAATGAGAGGCCACCGACACGGTTCACGACGACGAAACCAGCTTCGACAATCGTGTCGAAGTTTGAAGAGATAGCAGAGATGGAGAGGTTCAAAGTGATGAAGAAAGATGGGATGGTGAAACTCCAGGGAAGTAAACAAGGAAGAAAAGGGCAGTTGGGTATAGATGCTGAGATATTTGAAGTGACACCTTCTTTTTTTGTGGTGGAGGTGAAGAAAACTGCAGGAGATACCTTGGAATACAAGCAATTTTACAACAAAGACATGAAGCCTTTGTTGAAATATCATCACTAG 1314 43.76 MEKKGTILMQRYELGRLLGQGTFAKVYHARNLKSGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVKLYEVMASKTKIYFAMEFVKGGELFNKVARGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFNEQNLMEMYKKITRGEFKCPQWFPPEARKLLSRILNPCPFTRINMATLMENSWFKKGFKANVATPKPLQIKGDISSISDVEVALDEGSSVSNSSIESGRPPTRTNSFNAFDIISLSQGFDLSGLFENDMNERPPTRFTTTKPASTIVSKFEEIAEMERFKVMKKDGMVKLQGSKQGRKGQLGIDAEIFEVTPSFFVVEVKKTAGDTLEYKQFYNKDMKPLLKYHH 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2300342 2302588 + CmaCh18G004200.1 Cma18g00420 313758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00420 437 PANTHER - 2 434 - -
Cma18g00420 437 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Cma18g00420 437 Gene3D Kinase associated domain 1, KA1 319 435 - -
Cma18g00420 437 CDD CIPK_C 320 434 - -
Cma18g00420 437 Pfam NAF domain 317 375 IPR004041 GO:0007165
Cma18g00420 437 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00420 437 SUPERFAMILY Protein kinase-like (PK-like) 8 317 IPR011009 -
Cma18g00420 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cma18g00420 437 Gene3D Transferase(Phosphotransferase) domain 1 3 318 - -
Cma18g00420 437 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cma18g00420 437 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00420 437 CDD STKc_SnRK3 11 265 - -
Cma18g00420 437 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 434 - -
Cma18g00420 437 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00599 Cma18g00420 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01230 Cma-Chr7:6791652 Cma18g00420 Cma-Chr18:2300342 0 dispersed
Cma13g00599 Cma-Chr13:5887321 Cma18g00420 Cma-Chr18:2300342 0 wgd
Cma18g00420 Cma-Chr18:2300342 Cma03g01326 Cma-Chr3:8539246 3.59E-180 wgd
Cma18g00420 Cma-Chr18:2300342 Cma07g00182 Cma-Chr7:871594 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69287 PF00069 Pkinase 7.80E-73 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00420 K07198 - csv:101206082 748.429