Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00426 ATCGTCACCAATACAGTTCCTGATCTGGGTTTGATTGTGTTCGTGGCGTTGCTTTCTCATGGAAATGGGTTGGTGCAAAATCGTTCTCCGCCCAACCAAATCTTCGCTTCCACTTCCCGCAAACAATCAAATCCGTCTGTAAGACAGAGTTTGCTTCTCATCTCCTCTTCCTCACTCTGCAGATGCCTGAAACCAACTTCCCAACCTCTCATCTTTTCAACCACTACCCTCCAATGCTTTCACCGCCCTCTCCCAAACATCGATTCCGTTCATCTGGAATCAAAGGCAATCCAAGGGACTGACTGGCAAGTGAGTACCACAATGATGGTTTCTGATATCCCGATTTGCCACACTTGTGGTGAGCAAGTCGGAGTTGATACCAATGGAGAGGTTTTCATTGCTTGCCATGAGTGCCAATTTCCCATTTGCAAAGTCTGCGTTCAGTATGATATCAAGGAAGGCCGCAATGTTTGCTTGCGGTGTGGCTCGCCATTTGACAAGAATTTACTGATGGATGATACAAAGACATCAGGAAATCAACACACCATGGCATCTCATCTCAGTCATTCTCAGGATGTTGGAGTTCATGCTAGACATGTCAGTAGCGTATCAACTGTGGATAGTGAATTGAATGATGAATCTGGGAAACCAATATGGAAGAATAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAAAGATCTACTGTGAAGACAGAACAAGAAGCTCAAGTTCCACCCCAACAACAAATGGAAGAGAAACAGATTTCAGAGGAGGCTGTAGTTACACACTCATTTTCTTCAGTTTATCCGATTCCGTCGAGCAGATTAACACCATACAGAATAGTGATAATCATGCGATTGATCATTCTAGGTCTTTTCTTTCAATATAGGATTACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGTGAAATCTGGTTCGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCTGTCTGCAGGGACACATTTATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCCCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACCGTTGATCCGTTGAAAGAACCTCCTCTAATCACTGCGAATACTGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTCTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTCACATTTGAATCTCTAGTCGAAACAGCCGACTTCGCAAGGAAGTGGGTTCCATTTTGCAAAAAATTCTCCATTGAACCCCGAGCTCCCGAGTTTTACTTCTCCCAGAAAATAGACTATTTGAAAGATAAAGTACAACCTTCTTTTGTAAAGGAACGTAGAGCTATGAAAGCTCAAAAAACACCTGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAACAATCCACGTGATCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACCGGCGCCCATGACGTAGAGGGAAATGAACTTCCTCGACTAGTCTACGTCTCCAGAGAGAAGAGGCCTGGTTACCAGCATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTAAGAGTATCTGCAGTCCTCACAAACGCCCCCTTCATTCTCAACCTTGACTGCGATCACTATGTTAACAATAGTCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTTGGCCGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACGGTTTTCTTCGATGTGAACATGAAAGGATTGGATGGTATCCAGGGACCAGTTTATGTTGGTACAGGTTGTGTTTTCAATAGACAGGCACTTTATGGCTACGGACCTCCTTCCATGCCTAGCTTATCTAAGACATCCTCGTCATCTTGCTCTTGGTGTGGCTGCTGCTCTTGCTGCTGTCCTTCCAAGAAGATCTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCAGGGAAATAGATAATTATGATGAGTATGAGAGATCAATGCTGATTTCTCAACTGAGCTTTGAGAAAACTTTCGGATTGTCGTCTGTATTTATCGAGTCTACGCTAATGGAAAATGGAGGAGTAGCAGAATCTGCAAATCCGTCGACTTTGATCAAGGAAGCAATTCATATTGGTTGGATATATGGGTCAGTGACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGGTGGAGGTCCATCTACTGCATGCCATTTAGGCCAGCATTCAAAGGGTCCGCACCAATTAACCTTTCTGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGCAGACACTGTCCATTATGGTATGGATTTGCAGGCGGCCGCCTCAAATGGCTCCAAAGAATGGCTTACATAAACACCATTGTCTATCCCTTCACCTCGCTCCCTCTTGTTGCTTACTGCTCATTGCCTGCAATCTGCCTGCTCACAGGAAAATTCATCATTCCAACGCTCTCGAACCTAGCAAGTACCCTTTTTCTCGGTCTCTTCTTGTCCATCATTCTCACGAGTGTCCTCGAGCTGCGTTGGAGTGGTGTTAGCATCGAAGATATATGGCGTAACGAGCAATTCTGGGTCATCGGAGGCGTCTCGGCGCATCTCTTTGCTGTCTTCCAAGGTTTCCTAAAGATGTTAGCTGGTGTCGACACCAACTTCACGGTTACCACAAAGGCAGCCGAGGACACCGAGTTTGGAGAGCTTTACATGGTGAAATGGACGACACTTCTGATCCCTCCGACAACCCTTATCGTCGTCAACCTGGTCGGTGTCGTTGCAGGATTTTCTGATGCATTAAATGGTGGATATGAAGCATGGGGTCCTCTTTTTGGCAAGGTATTCTTTGCGTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAGAACAGAACTCCAACCATTGTTGTTCTTTGA 3066 44.85 IVTNTVPDLGLIVFVALLSHGNGLVQNRSPPNQIFASTSRKQSNPSVRQSLLLISSSSLCRCLKPTSQPLIFSTTTLQCFHRPLPNIDSVHLESKAIQGTDWQVSTTMMVSDIPICHTCGEQVGVDTNGEVFIACHECQFPICKVCVQYDIKEGRNVCLRCGSPFDKNLLMDDTKTSGNQHTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGKPIWKNRVESWKDKKNKKKRSTVKTEQEAQVPPQQQMEEKQISEEAVVTHSFSSVYPIPSSRLTPYRIVIIMRLIILGLFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDVEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSMPSLSKTSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLREIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHIGWIYGSVTEDILTGFKMHCRGWRSIYCMPFRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTTKAAEDTEFGELYMVKWTTLLIPPTTLIVVNLVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVL 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2331917 2339832 - CmaCh18G004260.1 Cma18g00426 313764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00426 1021 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 109 1021 - -
Cma18g00426 1021 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 109 1021 - -
Cma18g00426 1021 MobiDBLite consensus disorder prediction 230 253 - -
Cma18g00426 1021 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 494 639 IPR029044 -
Cma18g00426 1021 Pfam Cellulose synthase 361 1021 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma18g00426 1021 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 851 IPR029044 -
Cma18g00426 1021 SUPERFAMILY RING/U-box 106 174 - -
Cma18g00426 1021 Pfam Zinc-binding RING-finger 114 167 IPR027934 -
Cma18g00426 1021 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 187 IPR013083 -
Cma18g00426 1021 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 642 671 IPR017896 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00589 Cma18g00426 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00426 Cma-Chr18:2331917 Cma17g01379 Cma-Chr17:9205889 0 dispersed
Cma13g00589 Cma-Chr13:5847747 Cma18g00426 Cma-Chr18:2331917 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00426 K10999 - csv:101208988 1741.09