Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00429 ATGGATGCCACCTTCAACAACAACCGCCACCAATTCTATTCCGGTGATCCCTTAGATGATAGCGACGAGAAAGCCCCTGATTCTCCGCCTTCTACTTCCGCCGCCGCCGCCAAGAAGGGCAGAAGAGGGATGAAGAAGAAAGTGGTGTCGGTGAGAATTAATGGTGACAGCTCAAGGAATTCTTCTGGTTCTACTACTCCTCCGCCTGATTCTTGGGCTTGGAGAAAGGCGTATTATAGGTGTAGCAGTTCAAAGGGATGCCCGGCGAGGAAACAAGTAGAGAGGAATCGGCTTGATCCAACCATGTTGGTGATATCATATTCATGTGAACATAATCATTCCGGTCCGGTTTCTAGAAACATCAATAATCACCACAAAGCCGCCGCCGTGGGAAAACCCGGTTCGCCGGAGAGTGTGCCGGTTCATCCGGAACCGGAAGTGGAAGTGGAAGTGGAAGTGGAAGAGAAATTTGTGGATATGGGAGAGGAGTCGTTGATAACGGGGGACGAGTTCAGTTGGTTCGGGGAAATGGAAACGACGTCGTCCACTGTTCTCGAGAACTCGATTTTTTCTGGATGCTCGAGTGGATTGGGAGATTCGCTTTCCAGTGACGTGGCAATGCTTTTTCCGATGGGAGATAATGACGTGGACGACTCATTGTTTGCGGATCTCGGGGAGTTGCCGGAGTGTTCATTGGTGTTCCGGCACGGCGGAGCCCGGGGATTGGCGGCGGATGAACAACCGGCTGCCGGGCAGCGGCGGATCACTCCTTGGTGCGGAACCACCACTTGA 792 52.65 MDATFNNNRHQFYSGDPLDDSDEKAPDSPPSTSAAAAKKGRRGMKKKVVSVRINGDSSRNSSGSTTPPPDSWAWRKAYYRCSSSKGCPARKQVERNRLDPTMLVISYSCEHNHSGPVSRNINNHHKAAAVGKPGSPESVPVHPEPEVEVEVEVEEKFVDMGEESLITGDEFSWFGEMETTSSTVLENSIFSGCSSGLGDSLSSDVAMLFPMGDNDVDDSLFADLGELPECSLVFRHGGARGLAADEQPAAGQRRITPWCGTTT 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2364208 2366027 + CmaCh18G004290.1 Cma18g00429 313767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00429 263 Gene3D WRKY domain 54 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g00429 263 Pfam WRKY DNA -binding domain 76 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g00429 263 SUPERFAMILY WRKY DNA-binding domain 65 115 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g00429 263 ProSiteProfiles WRKY domain profile. 76 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g00429 263 MobiDBLite consensus disorder prediction 1 69 - -
Cma18g00429 263 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 27 261 IPR044810 GO:0003700
Cma18g00429 263 MobiDBLite consensus disorder prediction 53 69 - -
Cma18g00429 263 PANTHER OS01G0750100 PROTEIN 27 261 - -
Cma18g00429 263 SMART WRKY_cls 68 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00585 Cma18g00429 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00429 Cma-Chr18:2364208 Cma18g00530 Cma-Chr18:3291663 2.21E-21 dispersed
Cma11g01903 Cma-Chr11:12604487 Cma18g00429 Cma-Chr18:2364208 2.57E-36 wgd
Cma13g00585 Cma-Chr13:5832711 Cma18g00429 Cma-Chr18:2364208 3.96E-110 wgd
Cma18g00429 Cma-Chr18:2364208 Cma19g01009 Cma-Chr19:8683559 2.38E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36767 PF03106 WRKY 2.30E-10 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00429 - - csv:101203902 351.288