Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00432 ATGGTGACCGCCATTGCTAACTCATCCAAGCTCTTACAATTTCTCACTTCCATTGCTCACAATCAACAACTCGCAGATTTTGGAGTATCCTTTGTACAAATCACGAATTTGGGGGTTGGTGGATTATTTATGGCTGCTGCTGCGATTTTCTCGTCTTTACGAAGAAGGAGATCGCCGTCATTGGAGGCGTTTTTGGCTCCCGTTGATCTCTCCAATGTCGCCTTAGTTCAAACTCTAAGGATCGTTGCGACGGAGCTCGTTTCGCGATTTTCAGAGAAGTCTTTCTTCTTTCAGCGAAGAAATTCCCGATCTCTGATTAGGAAACTCGAGGTTTGTCTCGTATTTTTGGATTGCTTGAAGGATATTGATGCGACTTTGCCTCACACTGCGTTGCTATGTTTGAAAGAGCTTTATTTATTGTTGTATCGATCTAAAATACTTCTTGATTATTGCTCTGAATCAAGTAAGTTATGGCTGTTGCTTCAGAACCAGACGATTTCAGGGCATTTCAATGATTTGAATTTGGAGTTATTGACATTTTTAGATGTTTTTCCTCTTGAGGAAGTGGAATTAGGAGTGGATGTTAGAGAACAGGTTGAGCTTTTGCAGAAGCAATTGAGAAGGACGAGGATGTTCATCGATGAACACGTCGAGACGTTGAGGACTCGTTTCCTTTCGTTTCTCGACGAGTTTGAGAACGGTCTGCTTCCAAATCAGAGGGAATTGAGGGAGTTTTTCGTGGATAAGTTGGGGATTCGGAATGCGAAGAGTTGTAGAACTGAAATTGAGTTTCTGGAGGAGCAGATCGTCAATCATGATGGCGATGTTGAGCCCACCGTAGCGGTGTTGAACGGTTTCGTTGCTTTTACGAGATATAGCAGGTTTTTCCTCTTTGGATTCGAGGAAGATGATATTGATTCAGGAGCAGGAAACCAGAAGAAGCTGAAGAAGAATTTGATTATGCAGGAGATTGCTGATACGTTCTTAACAATTCCAAGGGATTTTTGCTGCCCAATATCTCTGGATTTGATGAAAGATCCGGTGATCATTTCTACAGGTCAAACATATGATCGTAGTTCGATCACGAGATGGTTGGAAGAAGGGCACAACACTTGCCCAAAATCAGGGCAAATGCTTGTCCATACCCGTCTCGCTCCGAACCGTGCGTTAGGGAATTTGATCATGCAATGGTGTATAGCACATGGAGTTCCTTATGATCCACCAGAGGGGATGGATGCATCTGTAGAAAGTTATGCAATGGCTTCACCTACACGAGCTGCTCTCAAAGCCAACCGAGCAACAGCTATGATTCTTATTCAACAGTTATCAATTGGGTCACAGGATGCGAAGACGATTGCTGCTCGCGAGATTCGTTTGTTGGCGAAAACGGGGAAAGAAAACCGTGCTTTCATTGCCGAAGCTGGTGCCATCCCTCATCTTCAAAAGTTGCTTACTTCCCCAAACCCAGTAGCACAGGAGAATTCTGTAACAGCTATGCTTAACCTTTCAATATATGACAAGAACAAAAGTTTGATTATGAGCGAGGTAGGGTGCTTAGGATCGATAACCAAAGTGTTGAGATCTGGACATAGTACCGAAGCACGGGAAAATGCTGCAGCTACGTTATTCAGCCTCTCTGCAGTTCATGATTACAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAACCTCTCGACTCACACGGAGAACTGCGTTCGGATGATCGATGCTGGGGCAGTAACAGCTCTTGTAGAAGCACTGGGGAATGAAGGTGTTGCCGAAGAAGCAGCAGGTGCATTGGCCTTGGTTGTTCGACAGCCGATAGGGGCTGAAGCAGTCGGTAAAGACGAGAGAGCTGTAGCAGGATTGATGGCAATGATGCGATGTGGAACACCAAGAGGAAAAGAGAACGCAGTAGCAGCTTTGCTCGAGTTATGCCGGAGTGGCGGAGCTGCCACGACCGAGCAGGTGTTCAAGGCTCCTGCATTGGCTGGGTTGCTCCAAATGCTCCTATTTACCGGAACCAAACGAGCAAGAAGAAAGGCTGCTTCGCTAGCTAGAGTGTTCCAAAGATGCGAGCAAGTCGCAATGCATTATGCCTATGCAAGTAACTCGACCCCTAACAGGGATTCAAGCTTCCCTAGCGAGGTGTCTGTTCCGATATCCATATCGGTACCCGTCGTATAG 2256 45.7 MVTAIANSSKLLQFLTSIAHNQQLADFGVSFVQITNLGVGGLFMAAAAIFSSLRRRRSPSLEAFLAPVDLSNVALVQTLRIVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDCLKDIDATLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNQTISGHFNDLNLELLTFLDVFPLEEVELGVDVREQVELLQKQLRRTRMFIDEHVETLRTRFLSFLDEFENGLLPNQRELREFFVDKLGIRNAKSCRTEIEFLEEQIVNHDGDVEPTVAVLNGFVAFTRYSRFFLFGFEEDDIDSGAGNQKKLKKNLIMQEIADTFLTIPRDFCCPISLDLMKDPVIISTGQTYDRSSITRWLEEGHNTCPKSGQMLVHTRLAPNRALGNLIMQWCIAHGVPYDPPEGMDASVESYAMASPTRAALKANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLTSPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITKVLRSGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTENCVRMIDAGAVTALVEALGNEGVAEEAAGALALVVRQPIGAEAVGKDERAVAGLMAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQMLLFTGTKRARRKAASLARVFQRCEQVAMHYAYASNSTPNRDSSFPSEVSVPISISVPVV 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2389946 2392693 + CmaCh18G004320.1 Cma18g00432 313770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00432 751 SMART Ubox_2 334 397 IPR003613 GO:0004842|GO:0016567
Cma18g00432 751 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 475 517 IPR000225 GO:0005515
Cma18g00432 751 CDD RING-Ubox_PUB 335 377 IPR045210 -
Cma18g00432 751 SMART arm_5 464 504 IPR000225 GO:0005515
Cma18g00432 751 SMART arm_5 549 589 IPR000225 GO:0005515
Cma18g00432 751 SMART arm_5 590 628 IPR000225 GO:0005515
Cma18g00432 751 SMART arm_5 506 547 IPR000225 GO:0005515
Cma18g00432 751 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Cma18g00432 751 PANTHER U BOX DOMAIN-CONTAINING 54 731 - -
Cma18g00432 751 Gene3D - 419 557 IPR011989 -
Cma18g00432 751 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 560 602 IPR000225 GO:0005515
Cma18g00432 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 405 IPR013083 -
Cma18g00432 751 SUPERFAMILY ARM repeat 437 718 IPR016024 -
Cma18g00432 751 SUPERFAMILY RING/U-box 320 405 - -
Cma18g00432 751 Pfam U-box domain 331 401 IPR003613 GO:0004842|GO:0016567
Cma18g00432 751 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 54 731 - -
Cma18g00432 751 ProSiteProfiles U-box domain profile. 330 404 IPR003613 GO:0004842|GO:0016567
Cma18g00432 751 Gene3D - 558 738 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00582 Cma18g00432 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00141 Cma-Chr15:669912 Cma18g00432 Cma-Chr18:2389946 2.83E-122 dispersed
Cma18g00432 Cma-Chr18:2389946 Cma13g00132 Cma-Chr13:899216 1.59E-99 dispersed
Cma13g00582 Cma-Chr13:5819182 Cma18g00432 Cma-Chr18:2389946 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00432 - - csv:101204151 1171.38