Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00433 ATGACATCAGGGAACAGAATGCCGACTTGGAAGGAGAGGGAGAATAACAAGCGCCGTGAGAGGCGCCGCCGTGCCATCGCCGCTAAGATCTTTCTCGGCTTGCGAATGTATGGCAACTACAAGCTTCCCAAGCACTGCGACAATAATGAGGTCCTCAAAGCCCTCTGCAATGAAGCTGGATGGACTGTTGAGGAAGACGGCACTACCTATCGCAAGGGATGCAAGCCTGTGGAACGTGATATCATGGGTGGATCAGCTTCTGCAAGTCCATGTTCATCGTACCAGCCGAGCCCATTTACGTCTTATAACCCAAGTCCTGCATCTTCTTCCTTCCCAAGCCCCACCTCTTCCCGTTACGCCATTGTAGGCAATGGCAATACTGCCGATCCCAATTCCCTCATCCCATGGTTGAAGAACCTCTCCTCAGGTTCATCATCAGCTTCTTCCCGGCTGCCTCATTACAATCATTACATAACTGGTGGCTCTATAAGTGCACCTGTCAGCCCTCCGTCGAGCTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCTGCAGCTGCTCCTGCTTGGGCAGCACAGCACTTCTCATGTATGGCGACCCCACCAAGCCCTGGACGTCAGGCATTGCCTGATTCGGCATGGCCTGATAGTATGCGGATTCCTCAAAGTGGACCATCGTCTCCAACCTTCAGCCTTGTGGCAAGGAATCCATTTGGATTCAAGGAGGCAATGTCTGCTGGAGGATCTCGTAACTGGACTCCTGCACAGAGTGGGACGTGCTCGCCCACGGTCACTGCAGGCGCCGATCATACTTCAGATGTTCTGATGACCGATGAAAGTGTGGCAGAGTTTGCCTTTGGAAGTTGTTCGGTTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCATGAGGAATGCATCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGAACAAGGGTTAATCCAGTTACATCCTCTTAA 1002 51.5 MTSGNRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVERDIMGGSASASPCSSYQPSPFTSYNPSPASSSFPSPTSSRYAIVGNGNTADPNSLIPWLKNLSSGSSSASSRLPHYNHYITGGSISAPVSPPSSSPTARTPRKPNDWDNHPAAAPAWAAQHFSCMATPPSPGRQALPDSAWPDSMRIPQSGPSSPTFSLVARNPFGFKEAMSAGGSRNWTPAQSGTCSPTVTAGADHTSDVLMTDESVAEFAFGSCSVGLVKPWEGERIHEECISDDLELTLGNSRTRVNPVTSS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2401598 2404460 + CmaCh18G004330.1 Cma18g00433 313771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00433 333 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 326 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cma18g00433 333 MobiDBLite consensus disorder prediction 162 221 - -
Cma18g00433 333 MobiDBLite consensus disorder prediction 1 20 - -
Cma18g00433 333 MobiDBLite consensus disorder prediction 85 115 - -
Cma18g00433 333 MobiDBLite consensus disorder prediction 250 269 - -
Cma18g00433 333 MobiDBLite consensus disorder prediction 86 115 - -
Cma18g00433 333 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 326 - -
Cma18g00433 333 MobiDBLite consensus disorder prediction 254 269 - -
Cma18g00433 333 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 141 IPR008540 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00580 Cma18g00433 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00431 Cma-Chr16:2148810 Cma18g00433 Cma-Chr18:2401598 1.25E-114 dispersed
Cma18g00433 Cma-Chr18:2401598 Cma18g00509 Cma-Chr18:3050546 7.56E-17 dispersed
Cma13g00580 Cma-Chr13:5806691 Cma18g00433 Cma-Chr18:2401598 3.98E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36768 PF05687 BES1_N 1.90E-66 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00433 - - csv:101204637 491.886