Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00439 ATGATGGTGGCCAAGAGCTTCTTCGTTTTCATTGTTCTTAATCTCTTGAGATTTGCAGATTCCAGGCTTCCCAAAGAAGAGGTCGATGCTCTACAGAAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATAGTGACTCCTGTGCCGTTGAAATGTTTGGGTTAACAGAAAACCCCCAGAGGGGATCTTCGAGTAAAATTGTTTGTGATTGCTTCCTCGAGGACAACACACTTTGTCATGTCATAAAGATAGAATTCAAAAGACACAATCTGCCCGGTGTTCTTCCACCTGAAATCGTCAAGCTTCGTTACCTGAAAGAAATTGATTTTTCTTACAATTACCTTCATGGTAATATACCTCGGGAGTGGGCGCTATTGCGGGTGACATCAATCTCTCTTCTTGTAAATCGGTTCTCAGGGGAAATACCAGTGGAATTGGGGAATATTACTACTCTAGCACACCTGTCCCTTGAAGCAAACCAATTTTCTGGAGCAATTCCATCAGAACTTGGGAGGTTAAGCAACCTAGAAACCTTGGTGCTATCATCTAATCAACTAACTGGCACATTGCCCACTACGTTTGCTGGTCTGGGAAGCCTAACAGATTTCCGAATTAGTGATAACAACCTGACGGGAACCATACCCGACTTCATACAGAATTGGAAACTACTCCATAGATTGAGGATCAGCGATATTCGTGGGCCAATGCAGGATTTTCCTGAGTTGGTGAACATGACAGGCTTGGTTCAATTGGTTCTGAGAAATTGCAACATTGCTGGAAGGATACCTCCGTATTTGTGGACGATACAGACTATGGAAATGATGGACCTCAGCTTTAATCAGTTGACTGGGGAAGTTCCAGAGGAAATAGACTTGGAGCGCATTAGATTTCTCTTCTTAACTGGCAATATGCTGAGTGGCAACGTACCAGATTCAATCATGATGGATGGAACTAATGTAGATCTTTCATTCAATAACTTTACATGGCAAGGTCCTGAGCAGTATGTTTGTAGAAAGAATATGAATATGAATCTGAACTTGTATCGAAGTTCTTCCTCCGGCGACTTCTTGAGGCAGGAAAGTCTCCCCTGCTTGAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCATCAATTGCGGTGGGTATGACTTGACTAATGTGGTAGACAACAACAACATTTTATACAATGGGGATGCAGATGTTGAAGGAGGGACGGCAAAATTATATGTTGATTATGATAGCTACTGGGGATTGAGTAGTACTGGAGATTTCATGGATGATAATGATTACCAAAATACACGTTACTCTTTTTCGCTGCCTTCATCAAATTTTTCCCAGATGTATTCAACAGCACGTCGTTGTCCAATTTCGCTCACTTATTTCCATCAATGCTTGGCAAATGGAAACTACACAGTGAAGATTCATTTCGTGGAGTTACGATTTACAAATGACAAGGCATATACGAGTCTTGGAAGACGGATATTTAATATCTACATTCAGGAAAGGTTAGTATTGGAGAATTTTGAAATTAAAGAAAGGGCAGGAGGAGCTCAAAAACTGATAGAATTGCAGTTTGATAATGTTAACGTAATTAACCATGTCCTCGAGATCCGATTCTATTGGGCTGGAAAAGGAACAACACGAATTCCTGATAGAGGAGTTTATGGTCCACTGGTATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTTCAATCTTTGAAAGTGGTCAAATGAAAACTGTAGCTATCTTCCTAAGGGTTGGATTATTATGCCTTTCTATAATCATCATAGTGGGATTTCTTCATTGGAAAGGCACCCTTCGAGTATTCGAGCAGGGTAAGGACGATACAGATGTTGCAGGAATAGACGTACAAACTGGAATTTTTACATTGAAACAAATAAAAGCTGCCACCAATGATTTTGATTCTTCTAATAAAATCGGAGAAGGCGGTTTTGGCCCTGTTTATAAGGGTCAGTTGGCCGATGGTACCGTCGTAGCAATTAAGCAGCTCTCGTCCAAATCAAAGCAAGGAAATCGCGAATTTCTGAACGAGATAGGAGTGATCTCTTATTTGCAACACCCGAATCTAGTCAAGCTCTTTGGATGTTGTATTGAAGGGGATCAGCTGTTGTTGGTGTATGAATATTTGGAAAACAATTGCCTTGCCCGAGCGCTATTTGGTCCAGAGTGCAGTCGTCTTAATTTAGATTGGCCAAGCAGGCTTAGAATCTGTATTGGTATAGCAAAAGGCTTAGCATATCTCCATGAGGAATCTAGCCTCAAAATTGTTCACAGAGACATCAAAGCTACTAATGTGCTATTGGATGGCAAACTGAATCCTAAGATATCTGATTTTGGTTTGGCTAAGCATGACGATGAGGAGAAGACTCACATCACGACCCGAGTGGCCGGGACCATTGGATATATGGCTCCGGAATATGCTCTCTGGGGTTATCTGACCCACAAAGCAGACGTTTATAGTTTTGGAGTCGTGGCGTTGGAAATTATCAGTGGAAGAAGCAACAATGACTATGTACCAAGTGAAACTTGTGTTTGTCTTCTTGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTCGTTGAGCTAGTTGATGAAAAGTTGAAGTCGGAAATCAACTGGTATGAAGCGAAAAACATGGTGAAAATTGCCCTTCTCTGCACAAATGCTTCACCATCGGTAAGGCCTTCGATGTCGGAAGTGGTGAACATGATCAAAGGACGAATGGAAATTCCAGACCTGGTCCTAGAACCAAGTTCTTATAATGAAGATTTGAGGTTCAAGGCAATGAGAGATATGCGTAAGGAGCAACAGAGCCAAACCCCGAAGGCAGGCCAGACGCAAACTTCCACAGCGCTAACATTTGAGTTTTCCCCTACATCTGGAAATGAGTTTTATGACATCAAACCAGATTCAAGTTCATCATTAATCTGA 2970 41.28 MMVAKSFFVFIVLNLLRFADSRLPKEEVDALQKITRTLGAVYWKFNSDSCAVEMFGLTENPQRGSSSKIVCDCFLEDNTLCHVIKIEFKRHNLPGVLPPEIVKLRYLKEIDFSYNYLHGNIPREWALLRVTSISLLVNRFSGEIPVELGNITTLAHLSLEANQFSGAIPSELGRLSNLETLVLSSNQLTGTLPTTFAGLGSLTDFRISDNNLTGTIPDFIQNWKLLHRLRISDIRGPMQDFPELVNMTGLVQLVLRNCNIAGRIPPYLWTIQTMEMMDLSFNQLTGEVPEEIDLERIRFLFLTGNMLSGNVPDSIMMDGTNVDLSFNNFTWQGPEQYVCRKNMNMNLNLYRSSSSGDFLRQESLPCLKDSICSKYSKCWFINCGGYDLTNVVDNNNILYNGDADVEGGTAKLYVDYDSYWGLSSTGDFMDDNDYQNTRYSFSLPSSNFSQMYSTARRCPISLTYFHQCLANGNYTVKIHFVELRFTNDKAYTSLGRRIFNIYIQERLVLENFEIKERAGGAQKLIELQFDNVNVINHVLEIRFYWAGKGTTRIPDRGVYGPLVSAISVYSDLKYCSIFESGQMKTVAIFLRVGLLCLSIIIIVGFLHWKGTLRVFEQGKDDTDVAGIDVQTGIFTLKQIKAATNDFDSSNKIGEGGFGPVYKGQLADGTVVAIKQLSSKSKQGNREFLNEIGVISYLQHPNLVKLFGCCIEGDQLLLVYEYLENNCLARALFGPECSRLNLDWPSRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGKLNPKISDFGLAKHDDEEKTHITTRVAGTIGYMAPEYALWGYLTHKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACHLQQSGNLVELVDEKLKSEINWYEAKNMVKIALLCTNASPSVRPSMSEVVNMIKGRMEIPDLVLEPSSYNEDLRFKAMRDMRKEQQSQTPKAGQTQTSTALTFEFSPTSGNEFYDIKPDSSSSLI 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2418041 2431886 + CmaCh18G004390.1 Cma18g00439 313777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00439 989 Gene3D Ribonuclease Inhibitor 237 355 IPR032675 -
Cma18g00439 989 ProSiteProfiles Protein kinase domain profile. 646 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00439 989 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Cma18g00439 989 CDD STKc_IRAK 652 919 - -
Cma18g00439 989 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 354 964 - -
Cma18g00439 989 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 226 261 - -
Cma18g00439 989 Pfam Protein tyrosine and serine/threonine kinase 649 916 IPR001245 GO:0004672|GO:0006468
Cma18g00439 989 SMART serkin_6 646 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00439 989 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 229 - -
Cma18g00439 989 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 260 331 - -
Cma18g00439 989 MobiDBLite consensus disorder prediction 970 989 - -
Cma18g00439 989 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 226 261 - -
Cma18g00439 989 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 354 964 - -
Cma18g00439 989 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 71 229 - -
Cma18g00439 989 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 260 331 - -
Cma18g00439 989 Gene3D - 376 572 - -
Cma18g00439 989 Gene3D Phosphorylase Kinase; domain 1 612 721 - -
Cma18g00439 989 Gene3D Ribonuclease Inhibitor 24 236 IPR032675 -
Cma18g00439 989 Gene3D Transferase(Phosphotransferase) domain 1 722 925 - -
Cma18g00439 989 SUPERFAMILY L domain-like 78 319 - -
Cma18g00439 989 SUPERFAMILY Protein kinase-like (PK-like) 629 939 IPR011009 -
Cma18g00439 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672|GO:0006468
Cma18g00439 989 Pfam Malectin domain 378 566 IPR021720 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00439 Cma-Chr18:2418041 Cma19g01059 Cma-Chr19:8910273 0 dispersed
Cma01g01261 Cma-Chr1:9083769 Cma18g00439 Cma-Chr18:2418041 0 wgd
Cma13g00577 Cma-Chr13:5785809 Cma18g00439 Cma-Chr18:2418041 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69289 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00439 - - cmax:111495536 1559.27