Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00441 | ATGGAGACGAATACGAGTAACAACGGAGTGAGGTTTCTGCTAGGGAAGCAGTCGTCGATGGCACCGGAGAGGCAGGCGGAGGAGGCGGCGGAGGCGACAGAGGCGACGGAGGACGGGGAGGAGATCCATCCGGGAGTGAGATTGATGTATTCGGCAAATGAAGGCGATTTGGAAGCGATTAAGGAGCTTATAGATTCTGGAGTTGATGTTAATTTTCACGATGCTGATAATCGGACGGCGCTTCATATTGCTGCTTGTCAAGGTTGCACGGAGATCGTCGATTTGTTGCTCCGGCGAGGAGCGGAGATTGACCCAAAAGACTGCTGGGGTAGTACGCCTCTCGCAGATGCTATATTCTACAAAAACCACGAAGTTATCAAATTGTTGGAAAAAAGCGGCGCAAAACATCTGAAAGCTCCCATGCTCGTCAAGCATGCTCGTGAAGTCCCCGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTAACCAAGGGAACCTTCCATTTAGCATCGTGGCGCGGAATCCGAGTTGCAGTCAAAGAACTCCCCGAGGATGTGATTTCTGATGAGGATAAAGTGAATGCTTTCAGAGACGAGCTTGCATTGCTTCAGAAGATTCGGCATCCGAACGTCGTTCAATTTCTCGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACCGAATATTTGCCTAAGGGAGATCTTTGCCAATTTTTACAGAAAAAAGGAGCTTTAAAACCAATTGTAGCTGTGAAATTTGCTCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAATAAACCCGCACCAATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAGCCTGAAAGTTGCAGACTTTGGAGTTAGCAAGCTGCTCACAGTCAAGGAGGATAAGCCACTGACTTGTCAAGACACTTCATGCCGATATGTGGCTCCAGAGGTTTTCAAGAACAATGGATATGATACTAAAGTGGATGTCTTCTCCTTTGCTTTAATACTACAAGAGATGATCGAAGGCCAACCGCCATTTTCAAACAAGAAAGAAAATGCTATTCTTAAAGAGTATGCAGGCGGTGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTACGCGCATGGAATCAAAGAGTTGATTGAAGATTGCTGGCATGAGAAGCCATCAAAGAGACCAAATTTTAGGCTGATAATCTCAAGGCTTGAAACCATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGCTTCCAACGCTGAGATGCTTCCAGAACGCAGAGGACAAGATAAGAAGAGGCCATCTCTCAAGCAGCCGGAGCCTCTCATCGAGATCTGCAAGCAGCATATGA | 1386 | 46.18 | METNTSNNGVRFLLGKQSSMAPERQAEEAAEATEATEDGEEIHPGVRLMYSANEGDLEAIKELIDSGVDVNFHDADNRTALHIAACQGCTEIVDLLLRRGAEIDPKDCWGSTPLADAIFYKNHEVIKLLEKSGAKHLKAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIRVAVKELPEDVISDEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQFLQKKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGSLKVADFGVSKLLTVKEDKPLTCQDTSCRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKEYAGGVRPAFKAPAKCYAHGIKELIEDCWHEKPSKRPNFRLIISRLETIHHSLSHRRRWKLPTLRCFQNAEDKIRRGHLSSSRSLSSRSASSI | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 2435883 | 2440316 | + | CmaCh18G004410.1 | Cma18g00441 | 313779 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00441 | 461 | CDD | STKc_MAP3K-like | 170 | 414 | - | - | |
Cma18g00441 | 461 | Gene3D | - | 15 | 149 | IPR036770 | - | |
Cma18g00441 | 461 | Pfam | Ankyrin repeats (3 copies) | 48 | 135 | IPR002110 | GO:0005515 | |
Cma18g00441 | 461 | ProSiteProfiles | Ankyrin repeat profile. | 48 | 75 | IPR002110 | GO:0005515 | |
Cma18g00441 | 461 | SMART | ANK_2a | 43 | 72 | IPR002110 | GO:0005515 | |
Cma18g00441 | 461 | SMART | ANK_2a | 76 | 105 | IPR002110 | GO:0005515 | |
Cma18g00441 | 461 | SMART | ANK_2a | 109 | 138 | IPR002110 | GO:0005515 | |
Cma18g00441 | 461 | ProSiteProfiles | Ankyrin repeat profile. | 76 | 108 | IPR002110 | GO:0005515 | |
Cma18g00441 | 461 | PIRSF | ILK | 1 | 436 | - | - | |
Cma18g00441 | 461 | ProSiteProfiles | Ankyrin repeat region circular profile. | 76 | 107 | - | - | |
Cma18g00441 | 461 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 | 12 | 444 | - | - | |
Cma18g00441 | 461 | ProSiteProfiles | Protein kinase domain profile. | 126 | 421 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00441 | 461 | SUPERFAMILY | Ankyrin repeat | 47 | 135 | IPR036770 | - | |
Cma18g00441 | 461 | Gene3D | Phosphorylase Kinase; domain 1 | 160 | 236 | - | - | |
Cma18g00441 | 461 | Pfam | Protein tyrosine and serine/threonine kinase | 170 | 414 | IPR001245 | GO:0004672|GO:0006468 | |
Cma18g00441 | 461 | Gene3D | Transferase(Phosphotransferase) domain 1 | 237 | 453 | - | - | |
Cma18g00441 | 461 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 12 | 444 | - | - | |
Cma18g00441 | 461 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cma18g00441 | 461 | SUPERFAMILY | Protein kinase-like (PK-like) | 170 | 423 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01354 | Cma18g00441 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g01618 | Cma-Chr11:10635588 | Cma18g00441 | Cma-Chr18:2435883 | 1.07E-128 | dispersed | |
Cma18g00441 | Cma-Chr18:2435883 | Cma20g00249 | Cma-Chr20:1220467 | 0 | dispersed | |
Cma18g00441 | Cma-Chr18:2435883 | Cma03g01354 | Cma-Chr3:8629792 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69290 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-55 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00441 | - | - | csv:101205123 | 791.956 |