Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00441 ATGGAGACGAATACGAGTAACAACGGAGTGAGGTTTCTGCTAGGGAAGCAGTCGTCGATGGCACCGGAGAGGCAGGCGGAGGAGGCGGCGGAGGCGACAGAGGCGACGGAGGACGGGGAGGAGATCCATCCGGGAGTGAGATTGATGTATTCGGCAAATGAAGGCGATTTGGAAGCGATTAAGGAGCTTATAGATTCTGGAGTTGATGTTAATTTTCACGATGCTGATAATCGGACGGCGCTTCATATTGCTGCTTGTCAAGGTTGCACGGAGATCGTCGATTTGTTGCTCCGGCGAGGAGCGGAGATTGACCCAAAAGACTGCTGGGGTAGTACGCCTCTCGCAGATGCTATATTCTACAAAAACCACGAAGTTATCAAATTGTTGGAAAAAAGCGGCGCAAAACATCTGAAAGCTCCCATGCTCGTCAAGCATGCTCGTGAAGTCCCCGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTAACCAAGGGAACCTTCCATTTAGCATCGTGGCGCGGAATCCGAGTTGCAGTCAAAGAACTCCCCGAGGATGTGATTTCTGATGAGGATAAAGTGAATGCTTTCAGAGACGAGCTTGCATTGCTTCAGAAGATTCGGCATCCGAACGTCGTTCAATTTCTCGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACCGAATATTTGCCTAAGGGAGATCTTTGCCAATTTTTACAGAAAAAAGGAGCTTTAAAACCAATTGTAGCTGTGAAATTTGCTCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAATAAACCCGCACCAATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAGCCTGAAAGTTGCAGACTTTGGAGTTAGCAAGCTGCTCACAGTCAAGGAGGATAAGCCACTGACTTGTCAAGACACTTCATGCCGATATGTGGCTCCAGAGGTTTTCAAGAACAATGGATATGATACTAAAGTGGATGTCTTCTCCTTTGCTTTAATACTACAAGAGATGATCGAAGGCCAACCGCCATTTTCAAACAAGAAAGAAAATGCTATTCTTAAAGAGTATGCAGGCGGTGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTACGCGCATGGAATCAAAGAGTTGATTGAAGATTGCTGGCATGAGAAGCCATCAAAGAGACCAAATTTTAGGCTGATAATCTCAAGGCTTGAAACCATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGCTTCCAACGCTGAGATGCTTCCAGAACGCAGAGGACAAGATAAGAAGAGGCCATCTCTCAAGCAGCCGGAGCCTCTCATCGAGATCTGCAAGCAGCATATGA 1386 46.18 METNTSNNGVRFLLGKQSSMAPERQAEEAAEATEATEDGEEIHPGVRLMYSANEGDLEAIKELIDSGVDVNFHDADNRTALHIAACQGCTEIVDLLLRRGAEIDPKDCWGSTPLADAIFYKNHEVIKLLEKSGAKHLKAPMLVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIRVAVKELPEDVISDEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQFLQKKGALKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGSLKVADFGVSKLLTVKEDKPLTCQDTSCRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAILKEYAGGVRPAFKAPAKCYAHGIKELIEDCWHEKPSKRPNFRLIISRLETIHHSLSHRRRWKLPTLRCFQNAEDKIRRGHLSSSRSLSSRSASSI 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2435883 2440316 + CmaCh18G004410.1 Cma18g00441 313779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00441 461 CDD STKc_MAP3K-like 170 414 - -
Cma18g00441 461 Gene3D - 15 149 IPR036770 -
Cma18g00441 461 Pfam Ankyrin repeats (3 copies) 48 135 IPR002110 GO:0005515
Cma18g00441 461 ProSiteProfiles Ankyrin repeat profile. 48 75 IPR002110 GO:0005515
Cma18g00441 461 SMART ANK_2a 43 72 IPR002110 GO:0005515
Cma18g00441 461 SMART ANK_2a 76 105 IPR002110 GO:0005515
Cma18g00441 461 SMART ANK_2a 109 138 IPR002110 GO:0005515
Cma18g00441 461 ProSiteProfiles Ankyrin repeat profile. 76 108 IPR002110 GO:0005515
Cma18g00441 461 PIRSF ILK 1 436 - -
Cma18g00441 461 ProSiteProfiles Ankyrin repeat region circular profile. 76 107 - -
Cma18g00441 461 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 12 444 - -
Cma18g00441 461 ProSiteProfiles Protein kinase domain profile. 126 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00441 461 SUPERFAMILY Ankyrin repeat 47 135 IPR036770 -
Cma18g00441 461 Gene3D Phosphorylase Kinase; domain 1 160 236 - -
Cma18g00441 461 Pfam Protein tyrosine and serine/threonine kinase 170 414 IPR001245 GO:0004672|GO:0006468
Cma18g00441 461 Gene3D Transferase(Phosphotransferase) domain 1 237 453 - -
Cma18g00441 461 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 444 - -
Cma18g00441 461 MobiDBLite consensus disorder prediction 1 39 - -
Cma18g00441 461 SUPERFAMILY Protein kinase-like (PK-like) 170 423 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01354 Cma18g00441 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01618 Cma-Chr11:10635588 Cma18g00441 Cma-Chr18:2435883 1.07E-128 dispersed
Cma18g00441 Cma-Chr18:2435883 Cma20g00249 Cma-Chr20:1220467 0 dispersed
Cma18g00441 Cma-Chr18:2435883 Cma03g01354 Cma-Chr3:8629792 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69290 PF07714 PK_Tyr_Ser-Thr 2.10E-55 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00441 - - csv:101205123 791.956