Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00443 ATGCTGTCAAACAACCATAACAACAGTCCTCCTACTCCTAGAACCAGATTGGAAAGGCTTCTTAGGGAGAGAGAGCTCAGGAGATCAAACCGGTCTTCTCTCAATGAAGAAGCTCACAGTCTGGGAGAATTCAACAGTTATGATCTGTTCTCTTTTTCTGGTGATAGTTGTGGGTCATTTAACGAGGAAGATATCTTAGAAGGGGTGTCAGTGGTAAAAGACATCATTGATGGGTTTCAAAGGCTAGAAGGGAGGACTTCTAAACAGCGCCTTCTAGTTGTAGCAAACAGATTGCCTGTGTCTGCTGTCAGGAAAGGGAAGGAGACATGGCATCTTGAAATTAGCGTTGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGTGTGAACGTACCTGACGAAGTCGGACAGAGAGCCCTAGAGAAAGCATTAGCTGAAAAGAAATGCATACCGGTCTTTCTTGATGAAGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTTCCACAAGAAGACCGCCTTGCAACAACACGGAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACAAAATGTTTGCTGATGTTGTAAACAAACATTATGAAGAGGGAGATGTTGTTTGGTGTCATGATTATCATTTGATGTTTCTCCCAAAATGTCTCAAAGAGCATAATCGTAAGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCGTCAGAAATACATAGAACTCTACCATCTCGGTCAGAGCTTTTGAGAGCTGTTCTTGCTGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGTGCCTGCACCCGTATTCTTGGGTTGGAGGGTACACCTGAAGGAGTAGAGGATCAAGGAAAACTGACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGATCGATTCATTCGAGCTCTTAAACTTCCTCAAGTCCAGGATCACATTAAAGAACTTCAAGAAAGATTTGCTGGACGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTCTGGCTTTTGAAAAATTTCTTGAAGAGAATCCAAAGTGGCGTGATAAAGTAGTTTTGCTGCAAATTGCTGTGCCAACAAGGACAGATGTTCCCGAGTATCAAAAGCTAACAAGTCAGGTTCATGAGATTGTTGGGCGTATTAATGGGAGGTTTGGCACCCTTACTGCAGTTCCAATACATCATCTGGATCGTTCACTTGACTTCCCTGCGTTATGTGCTTTATATGCTGTCACTGATGTGGCACTGGTTACATCTTTAAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGTCAAGCTTCCAAGAAAGGTGTTCTTATTCTGAGTGAGTTTGCTGGTGCAGCACAGTCATTAGGTGCTGGTGCTGTTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGGAAGCTGATGAAAGAGAAAGGCGACACCTTCATAACTTCATGCACGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAACGACACTGTAGTTGAAGCTCAGATCAGGACCAGACAGATACCACCTTTACTTCCAATTAATGAGGCAGCGAACAGTTATTCGCGATCACATAATCGATTGGTTATTCTGGGTTTCAATGCTACCTTAACTGAAGCAGTTGATGCCCTCGGAAGAAGATGTGGCCAAATTAGAGACATGGATCTTAAAGTACATCCAGATGTGAGAGAGCCCTTGAAGAAGCTTTGTGATGACCGGAATACGACAGTGGTTGTCCTTAGTGGGAGTGACAGAAGTGTTCTAGATGAGAATTTTGGTCAGTACAACATGTGGCTGGCAGCAGAAAACGGTATGTTCTTACGTCCTACAAAGGGAGAATGGATGACGACTATGCCCGAAAATTTACATATGGACTGGGTTGAGAGTGTTAAGCATGTTTTCGAGTATTTTACCGAAAGAACTCCTAGATCCCATTTCGAGCTCCGTGAAACTTCACTGGTGTGGAATTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGATCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTTCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATCAACAAGCCTATTGACTATGTTCTCTGTGTTGGGCACTTCCTAGCCAAGGATGAAGATGTGTATACATTTTTCGAGCCCGACCTTCCTTCTGAAGTGCCACAAACAGTCCCGAATCCTTTACCTCCGCCGAAGATGCCAAACAATGGAGCCCCACCGCCGAAGTCGGCACGCCTGAAGAAACAACGCTCCCTTTCCATTATAGAAAGAAGAGCAAACAGCCATGGGAGTGCAGTGTTTTGGAGGCCTGTAGTGCAGGATCGATTGTCACTGCATGAGGGTTCATCTGTTCTTGATCTCAAGGGTGACAATTACTTCTCGTGTGCTGTGGGGCGGAAGCGATCGAACGCAAGATATCTTCTTGTTTCGTCGAATGACGTTGTCAAACTTGTGAAGGAGTTGTCGGAATGTTTGGAGTCAAGTGTGAGTTGA 2772 43.58 MLSNNHNNSPPTPRTRLERLLRERELRRSNRSSLNEEAHSLGEFNSYDLFSFSGDSCGSFNEEDILEGVSVVKDIIDGFQRLEGRTSKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEVGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANKMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNRKMKVGWFLHTPFPSSEIHRTLPSRSELLRAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSDRFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFPALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAVLVNPWNITEVAASIGYALNMEADERERRHLHNFMHVTTHTSQEWAATFVSELNDTVVEAQIRTRQIPPLLPINEAANSYSRSHNRLVILGFNATLTEAVDALGRRCGQIRDMDLKVHPDVREPLKKLCDDRNTTVVVLSGSDRSVLDENFGQYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGSAIDRILGEIVRDKGINKPIDYVLCVGHFLAKDEDVYTFFEPDLPSEVPQTVPNPLPPPKMPNNGAPPPKSARLKKQRSLSIIERRANSHGSAVFWRPVVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLLVSSNDVVKLVKELSECLESSVS 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2444622 2453008 + CmaCh18G004430.1 Cma18g00443 313781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00443 923 Coils Coil 17 37 - -
Cma18g00443 923 PANTHER GLYCOSYL TRANSFERASE, FAMILY 20, TREHALOSE-PHOSPHATASE, HAD-LIKE DOMAIN PROTEIN-RELATED 62 915 - -
Cma18g00443 923 Gene3D Glycogen Phosphorylase B; 337 539 - -
Cma18g00443 923 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 62 915 IPR001830 GO:0003824|GO:0005992
Cma18g00443 923 Pfam Trehalose-phosphatase 614 813 IPR003337 GO:0003824|GO:0005992
Cma18g00443 923 Pfam Glycosyltransferase family 20 90 555 IPR001830 GO:0003824|GO:0005992
Cma18g00443 923 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 89 558 - -
Cma18g00443 923 MobiDBLite consensus disorder prediction 813 831 - -
Cma18g00443 923 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 90 555 IPR012766 GO:0003825|GO:0005992
Cma18g00443 923 MobiDBLite consensus disorder prediction 813 836 - -
Cma18g00443 923 Gene3D Glycogen Phosphorylase B; 82 336 - -
Cma18g00443 923 SUPERFAMILY HAD-like 588 910 IPR036412 -
Cma18g00443 923 CDD GT20_TPS 90 555 IPR001830 GO:0003824|GO:0005992
Cma18g00443 923 CDD HAD_TPP 588 808 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00443 Cma-Chr18:2444622 Cma04g00086 Cma-Chr4:429400 3.27E-140 dispersed
Cma01g01269 Cma-Chr1:9157325 Cma18g00443 Cma-Chr18:2444622 0 wgd
Cma11g01907 Cma-Chr11:12613065 Cma18g00443 Cma-Chr18:2444622 4.03E-139 wgd
Cma18g00443 Cma-Chr18:2444622 Cma19g01006 Cma-Chr19:8674708 4.87E-142 wgd
Cma18g00443 Cma-Chr18:2444622 Cma07g00170 Cma-Chr7:828739 2.32E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00443 K16055 - csv:101213690 1665.59